Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00705 ATGTCGAGCGAATCTGCGTCGACATCGAATCCTGTTCACTTCGCTGGTTCTAATCCTTCCGCTTCATCGCAGTTCACTTATTCAAACGGCTCTTATTTTCCTCTCCCTTTCCACCTACAACAATCCGATCCGACGGCGGTCCAACAATACCCTAAATCATACATGCCTCCACCGGTGGCTCCGATTCTCCCTCCGATGTATCCAGTGCCAGCGCCAGCTCCTGTTTCCGGTCTGTATTCTCTGCCACAATATCAACAGGCCCAACAATTGTTCCAAAGGGATGCACAAACAATTACACCAGAAGCTCTCGAAAGTGTAAAAGCTGCACTCGCAAGCAGTGAAATTGAGCACAAGGCAGAAACAAAAAAGAAAGCAATACCTCGTAAAGCTGCTGGGCAAACTTGGGAGGATCCAGTTCTTGCAGAGTGGCCAGAAAATGATTATCGCTTATTTTGTGGAGATCTCGGTAACGAAGTGAATGATGAGGTTCTTTCTAAAGCATTTTCAAGATTTCCTTCTTTTAACATGGCGAGAGTGGTGAGAGATAAACGGTCTGGTAAAACCCGTGGTTATGGATTTGTTAGTTTTTCCAACCCTTTAGACCTTGCGGCAGCACTGAAAGAAATGAATGGTAAGTACGTTGGAAACCGCCCAATTAAACTACGTAAGAGCAACTGGAAGGAGAGGACTGATTATGAGGCCGTGGAAAGGCAAAAGAATCAAACTCAAAAGAAACCAAAGCTCCCCAAGAAGAGTGTCTTGCACAAGTGA 771 0.4553 MSSESASTSNPVHFAGSNPSASSQFTYSNGSYFPLPFHLQQSDPTAVQQYPKSYMPPPVAPILPPMYPVPAPAPVSGLYSLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRKAAGQTWEDPVLAEWPENDYRLFCGDLGNEVNDEVLSKAFSRFPSFNMARVVRDKRSGKTRGYGFVSFSNPLDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYEAVERQKNQTQKKPKLPKKSVLHK* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00705 256 Gene3D - 83 223 IPR012677 -
Eupl07g00705 256 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 76 240 - -
Eupl07g00705 256 CDD RRM_RBM42 142 224 IPR034215 -
Eupl07g00705 256 MobiDBLite consensus disorder prediction 1 22 - -
Eupl07g00705 256 MobiDBLite consensus disorder prediction 229 256 - -
Eupl07g00705 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 148 226 IPR000504 GO:0003723
Eupl07g00705 256 FunFam RNA-binding protein 42 83 233 - -
Eupl07g00705 256 SMART rrm1_1 149 222 IPR000504 GO:0003723
Eupl07g00705 256 MobiDBLite consensus disorder prediction 229 243 - -
Eupl07g00705 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 150 220 IPR000504 GO:0003723
Eupl07g00705 256 SUPERFAMILY RNA-binding domain, RBD 131 228 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g00705 Eupl-Chr7 21669235 21682746 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00705 150 250 Eukaryotic Initiation Factors Gene Family AT1G71770 27.723 1.22e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g00705 K25079 - ming:122064515 411.764