Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00692 ATGGAGGAAGAAGAGGAGGATAGAATTTTGTTAAGTCATCTGGGCATCACATCTGCCAACCCTGAAGATATTGAACGCGACATACTAGCAGAGCAGGCGAAAAATGATGCTGGAGACAGGAGCGAAGCTGGAGGGAGCTCTGAGGAGTGGCTTCTTGACGACACAAAAGACATTGACCCATCAGCCACAAGTCGAGCCAAAGTTTATAATAAATTGAGGGCAGTAGAAGTTGAAATAGATGCTGTTGCAGCTAGTGTTGAGCAGGCTAGGAATGTTGCAAGAAATGAAGACCATGTGTCAGATACTATTGATGATGGAGAGGAGGGAGATGTAAAGGATTATAAAAATGTCATTCAAGTTTATGCCAATGGTTTAAACCTTCAGCATGCCCTAGCCGCTGATCGTCTAAGAAGCCTTGAGAAAACAAAGGATCGGCTTCAAAAGGAACTTTCAGAGTTGGAAAAGGATGATCCTAGCAAAGGTATTGGGCATGACAAGTTGATTAAAGATCTGGTTAAGGAAGAAGCAAAACCCAAACGAAAGTTGAAAGAAGTTCAAAAGTTGAGCAAAGATTTAAAAAAACGAAAGAAAACAGTTTCTTTTGATGAAGATGTTGATTTTGATGTAGTACTGGATGCAGCCTCTGCGGGATTTGTTGAAACGGAAAGGGATGAGTTGGTTCGAAAAGGCATCTTAACTCCTTTTCATAAGCTTAAAGGCTTTGAGCGTCGGCTTCAACAACCGGGGCCATCAAATAGGCACAATGTACCTGAGGAAGAAGTCAAAACTGAGAATATTGCTTCAGCCACTATTGCTAGAGCTGTTCGATCAATATCTGAGGCTGCACAAGCTCGCCCAACAACCAAGCTGCTTGATGCAACAGATTTACCTAAACTTGATGCACCAACTCATCCTTTTCACAAACTGAAAACGCCCTTAAAACTACCACGGTCCCCAGGCACCGAGTCAGCGAAGAATAAAGACAAGAGAAGAAAACAAAAGAGGCCTTTACCTGACAAGAAATGGAGAAAGGTTGTTTCTCGTGAAGAGAAACTTTCAGAAGAAAGTGAAGAAGATGCAAGTGATAACTTGATTACCTCTGATTACGAGGAAAATCAAGATGTCGAAGAAGCCGATGATGGTGAACCTCCTTATGTAACGCTGGAAGGAGGGTTGAAAATCCCAGAAGGGATTTTCAGCAAACTCCTTGACTATCAAAAAGTGGGAGTGCAGTGGCTGTGGGAACTACATTGCCAAAGAGCAGGTGGAATTATTGGGGATGAAATGGGTCTTGGTAAGACCATTCAGGTCTTATCTTTCCTTGGAGCTTTGCATTTCAGTAAGATGTATAAACCTAGTATTGTTATTTGTCCTGTGACCCTCTTGCGACAGTGGAGAAGGGAAGCACGAAAATGGTACCCAAGCTTCCGTGTTGAGATACTACATGATTCTGCTCATGGTCCTGCTAATAGGAAGAAACAAGCGAAATCTATTGAAAGTGATGACGAAAGTGAAGGCTCATTAGACAGTGATAATGAAAGACCTCTTACCACAAAAACCACTGAAAAGTGGGGTTCTTTGATAGGTCGTGTTTTGAGATCAGAATCTGGGTTGCTCATTACTACCTATGAGCAACTCCGGCTGCTAGGGGAAAAACTGCTTGACATTGAATGGGGTTATGCGGTACTGGATGAAGGACATCGCATCCGAAATCCTAATACAGAGGTTACTCTAGTTTGCAAACAGTTGCAAACGGTGCATCGTATAATAATGACAGGCGCACCAATCCAGAACAAGCTGACAGAGCTGTGGTCATTGTTCGATTTTGTCTTTCCCGGAAAGCTGGGTGTTTTGCCTGTATTTGAGGCAGAATTTGCAGTACCCATTTCAGTTGGTGGTTATGCAAATGCTACACCATTGCAAGTATCTACAGCTTACAGGTGTGCAGTCGTCCTACGCGATCTGATCATGCCTTATCTCCTTCGACGTATGAAAGCTGATGTTAATGCTCATCTTCCAAAGAAGACCGAGCACGTTCTCTTTTGCAGCCTGACTGCAGAGCAGCGTTCTGTTTACCGAGCGTTTCTTGCTAGCTCCGAGGTAGAACAGATCTTTGATGGGAATAGAAACTCTCTTTATGGAATTGATGTCATGCGTAAGATTTGCAACCATCCTGATCTGCTTGAGAGAGAGCATTCCTCTTGCAATCCGGACTATGGGAACCCAGAGCGAAGTGGAAAAATGAAAGTCGTTGCCCAAGTGCTTAAGGTGTGGAAGGACCAGGGTCACCGTGTACTTCTTTTCTCACAGACCCAACAAATGCTAGATATTCTTGAGAGTTTCCTGATCACAAATGATTATACCTATCGACGAATGGATGGACTTACTCCCATAAAACAGCGGATGGCCCTGATAGATGAATTCAATAACACGAATGATGTATTCATCTTCATTCTAACTACTAAAGTTGGTGGCTTGGGAACAAATCTGATTGGAGCAAACAGGGTGATCATCTTCGATCCTGATTGGAACCCTTCTACTGACATGCAGGCAAGGGAACGTGCCTGGCGTATTGGGCAGACACGGGATGTAACGGTATATAGGTTGATTTCTCGTGGAACTATAGAGGAGAAGGTTTATCACAGGCAAATTTACAAACATTTCCTCACCAATAAGATATTAAAGAACCCACAGCAAAGAAGGTTCTTCAAAGCTAGAGACATGAAGGATCTCTTCACTTTGCAAGATGATGGAGAAGGTGGTTCAACAGAAACATCAAATATTTTCGGTCAATTGTCTGGAGATATAAATGTCATTGAATCCCATAAAGATAACCAGGATAAACCCAAAACTCTCGATCCAGCAGTAACGTGTGCTGGTGAGGTTAAAGTTGGAAGAGGAGCCAATTCTTTAGCTGTCGGACCATCCAGAAGTAAAGGAAAAGAAAAGGCTGATCAGAATGATGAAGTAGATGAAGAAATGAACGTGCTAAAGAGTCTTTTTGATACTCAAGGGATACATAGTGCCGTGAACCATGATGTGATTATGAATGCCAATGACGTAGAGAAGATGAGGCTTGAGGAGCAAGCTTCCCAAGTCGCACAAAAGGCTGCTGAAGCATTACGGCAATCACGGATGCTCCGAAGCCGAGATAGTATATCTGTTCCCACATGGACTGGGAGATCCGGTGCAGCTGGTGCCCCATCATCCATCCGGAAGAAGTTCGGCTCAACCGTGAACTCCCAGTTGGTCGTTAATTCAAAATCTTCAGAAGGGTCTTCTGGCAATGGGATGAGCAAGCCAAATGGCTTTGCAGCAGGGGCATCTGTGGGGAAGGCTTTATCTTCAGCTGAACTATTGACTAGAATTCAGGGAACCCAAGAAAGGGCAGTTGGTGATGGGCTTGAACATCAATTCGGCTCGGCCTCCGGCTCTAATAACAGAGAACAACCTTCAGCAGATGTGGGGCCTTCTAGGCCATCTCACAAGATCTCTGGAGTACAGCCTGAGGTATTGATTCGTCAGATATGTACGTTCATACAGCAAAAAGGTGGTACTACCACTTCAGCCACTATAGTGCAACATTTCAAGGACAGGATACCCTCCAAGGATCTGCCCCTATTTAAGAATCTTCTCAAGGAAATAGCCATATTAGTGAAAGACTCGAGTGGATCCTCATGGATTCTAAAGGCCGAGTATCTACAGCATTAA 3711 0.4373 MEEEEEDRILLSHLGITSANPEDIERDILAEQAKNDAGDRSEAGGSSEEWLLDDTKDIDPSATSRAKVYNKLRAVEVEIDAVAASVEQARNVARNEDHVSDTIDDGEEGDVKDYKNVIQVYANGLNLQHALAADRLRSLEKTKDRLQKELSELEKDDPSKGIGHDKLIKDLVKEEAKPKRKLKEVQKLSKDLKKRKKTVSFDEDVDFDVVLDAASAGFVETERDELVRKGILTPFHKLKGFERRLQQPGPSNRHNVPEEEVKTENIASATIARAVRSISEAAQARPTTKLLDATDLPKLDAPTHPFHKLKTPLKLPRSPGTESAKNKDKRRKQKRPLPDKKWRKVVSREEKLSEESEEDASDNLITSDYEENQDVEEADDGEPPYVTLEGGLKIPEGIFSKLLDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSKMYKPSIVICPVTLLRQWRREARKWYPSFRVEILHDSAHGPANRKKQAKSIESDDESEGSLDSDNERPLTTKTTEKWGSLIGRVLRSESGLLITTYEQLRLLGEKLLDIEWGYAVLDEGHRIRNPNTEVTLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFAVPISVGGYANATPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAHLPKKTEHVLFCSLTAEQRSVYRAFLASSEVEQIFDGNRNSLYGIDVMRKICNHPDLLEREHSSCNPDYGNPERSGKMKVVAQVLKVWKDQGHRVLLFSQTQQMLDILESFLITNDYTYRRMDGLTPIKQRMALIDEFNNTNDVFIFILTTKVGGLGTNLIGANRVIIFDPDWNPSTDMQARERAWRIGQTRDVTVYRLISRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARDMKDLFTLQDDGEGGSTETSNIFGQLSGDINVIESHKDNQDKPKTLDPAVTCAGEVKVGRGANSLAVGPSRSKGKEKADQNDEVDEEMNVLKSLFDTQGIHSAVNHDVIMNANDVEKMRLEEQASQVAQKAAEALRQSRMLRSRDSISVPTWTGRSGAAGAPSSIRKKFGSTVNSQLVVNSKSSEGSSGNGMSKPNGFAAGASVGKALSSAELLTRIQGTQERAVGDGLEHQFGSASGSNNREQPSADVGPSRPSHKISGVQPEVLIRQICTFIQQKGGTTTSATIVQHFKDRIPSKDLPLFKNLLKEIAILVKDSSGSSWILKAEYLQH* 1237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00692 1236 Gene3D - 371 662 IPR038718 -
Eupl07g00692 1236 PANTHER SNF2/RAD54 FAMILY MEMBER 175 1213 - -
Eupl07g00692 1236 SMART ultradead3 398 630 IPR014001 -
Eupl07g00692 1236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 386 663 IPR027417 -
Eupl07g00692 1236 MobiDBLite consensus disorder prediction 355 383 - -
Eupl07g00692 1236 CDD SF2_C_SNF 745 870 - -
Eupl07g00692 1236 MobiDBLite consensus disorder prediction 242 264 - -
Eupl07g00692 1236 MobiDBLite consensus disorder prediction 31 58 - -
Eupl07g00692 1236 FunFam Protein CHROMATIN REMODELING 8 380 662 - -
Eupl07g00692 1236 MobiDBLite consensus disorder prediction 1136 1164 - -
Eupl07g00692 1236 SMART helicmild6 776 859 IPR001650 -
Eupl07g00692 1236 Coils Coil 129 156 - -
Eupl07g00692 1236 Gene3D - 669 952 IPR027417 -
Eupl07g00692 1236 MobiDBLite consensus disorder prediction 340 354 - -
Eupl07g00692 1236 Coils Coil 1023 1043 - -
Eupl07g00692 1236 CDD DEXHc_ERCC6 402 612 - -
Eupl07g00692 1236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 665 922 IPR027417 -
Eupl07g00692 1236 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 750 909 IPR001650 -
Eupl07g00692 1236 MobiDBLite consensus disorder prediction 1139 1154 - -
Eupl07g00692 1236 MobiDBLite consensus disorder prediction 969 991 - -
Eupl07g00692 1236 MobiDBLite consensus disorder prediction 293 384 - -
Eupl07g00692 1236 Pfam SNF2-related domain 405 727 IPR000330 GO:0005524|GO:0140658
Eupl07g00692 1236 Pfam Helicase conserved C-terminal domain 753 859 IPR001650 -
Eupl07g00692 1236 MobiDBLite consensus disorder prediction 487 517 - -
Eupl07g00692 1236 CDD CSB_WHD 1168 1233 - -
Eupl07g00692 1236 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 414 613 IPR014001 -
Eupl07g00692 1236 FunFam DNA excision repair protein ERCC-6 670 948 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g00692 Eupl-Chr7 21319629 21330248 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00692 745 913 RAD5 or RAD16-like Gene Family AT5G22750 33.136 6.68e-25 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Eupl07g00692 SNF2_N 9e-61 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g00692 K10841 - ming:122069349 1857.03