Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00629 ATGGATTCAGATCTAGGGAAGCTGTTCATCGGAGGGATTTCATGGGACACATCAGAGGAGAAGCTGAAGGAGTATTTTGAGAACTTTGGCGATGTTTTGCAGACTGTGATAATGCGTGATAAGATCACAGGGAGGCCCAGAGGGTTTGGGTTTGTTGTATTTGCAGATCCTTCGATCCTCGATAGGGTTCTTCAAGATAAGCACACCATCGATGGAAGAGCGGTGGAAGCTAAAAGGGCTTTATCAAGAGAGGAACAACACACCTCTTCTAGATCTGGAAACCCTAATGCAGGTAGAAGCTTTGGAGGTGCGGGTAATATTAAGACGAAGAAGATATTTGTAGGAGGGTTACCTCCCACTTTGACAGAAGAAGGATTTCGTCAGTATTTTGAGAGATATGGTCATGTAACGGATGTAGTTGTCATGTATGATCAGGCTACCCAACGGCCTCGTGGATTTGGATTCATCTCCTTTGATACTGAAGATGCGGTTGATAGAGTTCTACACAAGTCCTTTCACGAGTTGAATGGTAAACTTGTGGAGGTCAAGCGCGCCCTTCCAAAAGATGCTAACCCTGGCAGTGGTGGCCGTTCGACGGGTGGTGGGAGTTATCAGAGTTATGGTGCTTCTGGTGCCAACACTAGTACATATGATGGTCGAATGGATGCCAATAGGTACATTCAGCCTCAAGCAACCGGAGGTGGTTTTCCAGCATATGCTTCTTCTGGCTATGGTGCATCGGGCTATGGATATGGTGCAACTAATAATGTTGTTGGGTATGGTGGATATGGTGTTAGTAGCTATGGTAGTGCCAATGCTGGGTATAGTGGCCCTGCTGGGGCATATGGAAACCCGAATGCCCAAAATGCTGGTTACGTAAGTGGCCCACCTGGTGCTCCAAGAAGCCCATGGAATGCTCAAGCTCTTGGATATGGTTCTGCGGCCTATGGTGCAAATACGGGCTATGGGACTGCAGCTCCTTGGAGTGCCACAGGGGTTGGTGGTGCTGCTGGTAGTGGTGGTACTGCTTCTGCACCAACAGGTCAATCGCCAAGCGGAGCTGCTGCCTATGCGAGTCAAGGTTATGGTTATGGTGGTTATGGTGGGAGCGATGGTTCTTATGCTAATCCAGGAAGCTATGGTGCTGTTGGAGGGCGTGCTGGTAGTAACCCAAATAGCCACACTGCTGGTGGGGGTGAGCAACAAGGGACGGGTGCTGGCTACATGGCAAGTGGCTATGGTGATTCTAATGGAAACTCAGGGTACCCAACTGCAGCTTGGAGGTCTGATCCTTCACAAGCTGGGAGTTATGGGGTTGCCCAGGCAAACGGACCTCCAGGTGGCCAGGTTGGTTATGGTGGTGGGTATAGTGGTGCTCAGTCCAGGCAGGCCCAACAGCAGTAA 1404 0.4986 MDSDLGKLFIGGISWDTSEEKLKEYFENFGDVLQTVIMRDKITGRPRGFGFVVFADPSILDRVLQDKHTIDGRAVEAKRALSREEQHTSSRSGNPNAGRSFGGAGNIKTKKIFVGGLPPTLTEEGFRQYFERYGHVTDVVVMYDQATQRPRGFGFISFDTEDAVDRVLHKSFHELNGKLVEVKRALPKDANPGSGGRSTGGGSYQSYGASGANTSTYDGRMDANRYIQPQATGGGFPAYASSGYGASGYGYGATNNVVGYGGYGVSSYGSANAGYSGPAGAYGNPNAQNAGYVSGPPGAPRSPWNAQALGYGSAAYGANTGYGTAAPWSATGVGGAAGSGGTASAPTGQSPSGAAAYASQGYGYGGYGGSDGSYANPGSYGAVGGRAGSNPNSHTAGGGEQQGTGAGYMASGYGDSNGNSGYPTAAWRSDPSQAGSYGVAQANGPPGGQVGYGGGYSGAQSRQAQQQ* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00629 467 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Eupl07g00629 467 SMART rrm1_1 7 78 IPR000504 GO:0003723
Eupl07g00629 467 SMART rrm1_1 111 183 IPR000504 GO:0003723
Eupl07g00629 467 MobiDBLite consensus disorder prediction 76 104 - -
Eupl07g00629 467 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Eupl07g00629 467 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 177 IPR000504 GO:0003723
Eupl07g00629 467 MobiDBLite consensus disorder prediction 186 208 - -
Eupl07g00629 467 SUPERFAMILY RNA-binding domain, RBD 4 103 IPR035979 GO:0003676
Eupl07g00629 467 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Eupl07g00629 467 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Eupl07g00629 467 CDD RRM2_Hrp1p 111 188 - -
Eupl07g00629 467 MobiDBLite consensus disorder prediction 413 439 - -
Eupl07g00629 467 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 187 IPR000504 GO:0003723
Eupl07g00629 467 SUPERFAMILY RNA-binding domain, RBD 108 212 IPR035979 GO:0003676
Eupl07g00629 467 MobiDBLite consensus disorder prediction 386 400 - -
Eupl07g00629 467 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 467 - -
Eupl07g00629 467 Gene3D - 104 225 IPR012677 -
Eupl07g00629 467 Gene3D - 6 88 IPR012677 -
Eupl07g00629 467 MobiDBLite consensus disorder prediction 385 467 - -
Eupl07g00629 467 FunFam heterogeneous nuclear ribonucleoprotein 1 105 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g00629 Eupl-Chr7 19820903 19824019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00629 8 180 Eukaryotic Initiation Factors Gene Family AT2G36660 24.157 6.34e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g00629 K14411 - nnu:104602803 590.112