Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00620 ATGGCGGCCATAGGTTCATGCTTCTCTACAGCCACTCCGGCTACACGTATGAGCTCAAATCACATGTCCTCCGATTTAGTCCTTAGAATTGCCTGTATACGCACGTTCCAAACAGCATCAATATCTCACTCAATTGCTGCTGCTGTCTCTCACAAGTGGCGGACCCCCAGGATTGCCGCCGCTGTGGTGCAAGAAGAGTCAGCGGGGGCGATCGAAAAGGAAATCGTTGAGGAGGAGGAGGAAGCAGAAGAAATGTTGGGTGAAGGAGAGGTTAAAGCTCCTTCAAACACTAAGCTTTACTTTGGTAATTTGCCTTATAATTGCGACAGTGCCCAACTCGCCGGAATAATTCAAGAGTACGGAAGTCCAGAGATGGTTGAGGTGCTTTATGATAGGGATACAGGAAGGAGCAGGGGGTTTGCATTTGTTACAATGAGCAGCATCGAGGATGCTAATGCAGTTATCCAAAATCTTGATGGAAGTGATTATGGTGGCAGAACATTGAGGGTGAACTTTTCTGACAAACCTAGACCTAAAGAACCTTTGTATCCTGAAAGTGAACACAAGCTTTTCGTCGGAAATTTATCATGGTCAGTCACTTCTGAGAGTTTGACCCGAGTGTTTCAAGAATATGGTAATGTGCTTGGAGCTAGGGTTCTATATGATGGGGAGACGGGACGGTCTCGTGGTTATGGTTTTGTATGCTACTCATCAAAGCTAGAGATGGAAGCTGCTCTCCAATCTCTTGATGGAGTGGAATTAGAAGGGCGAGCACTGCGAGTTAGCCTAGCGCAGGGCAAGCGATCCTAG 810 0.4704 MAAIGSCFSTATPATRMSSNHMSSDLVLRIACIRTFQTASISHSIAAAVSHKWRTPRIAAAVVQEESAGAIEKEIVEEEEEAEEMLGEGEVKAPSNTKLYFGNLPYNCDSAQLAGIIQEYGSPEMVEVLYDRDTGRSRGFAFVTMSSIEDANAVIQNLDGSDYGGRTLRVNFSDKPRPKEPLYPESEHKLFVGNLSWSVTSESLTRVFQEYGNVLGARVLYDGETGRSRGYGFVCYSSKLEMEAALQSLDGVELEGRALRVSLAQGKRS* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00620 269 Gene3D - 179 269 IPR012677 -
Eupl07g00620 269 SUPERFAMILY RNA-binding domain, RBD 92 180 IPR035979 GO:0003676
Eupl07g00620 269 Gene3D - 61 178 IPR012677 -
Eupl07g00620 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 266 IPR000504 GO:0003723
Eupl07g00620 269 SMART rrm1_1 98 171 IPR000504 GO:0003723
Eupl07g00620 269 SMART rrm1_1 189 262 IPR000504 GO:0003723
Eupl07g00620 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 260 IPR000504 GO:0003723
Eupl07g00620 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 169 IPR000504 GO:0003723
Eupl07g00620 269 CDD RRM2_NsCP33_like 189 264 - -
Eupl07g00620 269 SUPERFAMILY RNA-binding domain, RBD 181 268 IPR035979 GO:0003676
Eupl07g00620 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 175 IPR000504 GO:0003723
Eupl07g00620 269 Coils Coil 68 88 - -
Eupl07g00620 269 PANTHER OS02G0815200 PROTEIN 35 268 - -
Eupl07g00620 269 FunFam 28 kDa ribonucleoprotein, chloroplastic 179 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g00620 Eupl-Chr7 19616717 19625135 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00620 97 267 Eukaryotic Initiation Factors Gene Family AT2G36660 30.270 6.26e-19 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g00620 - - ming:122088101 381.333