Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00586 ATGAATCATTGCGTTCCTGATTTTGAAATGGAGGAGGACGACTCGATCCCGACCTCTTCCGGATTATCTCGCCCCAACAAACACTCACCGCCTGAGGACGAGCTCGTGGAGCTACTATGGCAGAACGGACAGGTCGTTATGCAAAGCCAGAACCAGAGATCTCAAAAGAAATCCCCGCCGAAATTCCCCGTTCAAGACGCAGTTCCACCCGCTGGAGAATCAACGGCCGGGGGTATCCAACCATCTGCTGCCGTAGTGGCGGAGGAAGCAGCGAATCAGCTCTTCATGCAGGAAGACGAGATGGCGTCCTGGTTGCATTACCCTCTAGACGATACCTTCGACCGGGATTTCTGTGCTGATCTCCTCTATCCTGCGCCATCCGCTAACTACGCCCCTGCAAGCACGGTTAGTCAGATTCCGGACGATAACCGACCAGAAGATAAGATTCCGGTGGCTCCTCGGCCGCCAATCCCACCAGCGAGGCGGATGGAGCTGGATTCGTCCTCGAAGTTCCTTAACTTCATGCATTTCTCGCGGTCAAAAGCGAGAGCCGAATCTCAGCCGTCGACTTCGGATAAAACGGCGAGGGAATCAACTGTTGTTGATTCTAGCGATACTCCCGCTGTGGGGCCGGGATCCAGGGTTTCGCACGGCGCGAGACGTACGGCCCCGGTATCTGACGGGAATTTGGGGGGCAGAAGTATGGGCGGCGATGCAGCAGCGGATAGAGATAGAGAGTTGGTGACCTGTGAACAGGCGGTGACGTCATCCTCCGGCGGGTCCGGAGCCAGCCCGGAGTCGTTAGGGAAGCCGCCGGCGGACAACCGGAAAAGAAAAGCGAGAGAAACAGAAGATAACGAGTGCAGCGAGGATGCTGAATTCGAATCTGTTGACAAAAAGAAACAAGGTCATGGATCAACATCTGCAAGAAGAGCTCGTGCTGCAGAGGTCCACAATCTCTCTGAAAGGAGACGTCGAGATAGGATAAATGAGAAGATGAAGGCTTTGCAAGAACTCATACCCCGGTGCAACAAGTCAGACAAAGCTTCAATGCTGGATGAGGCAATTGAGTACTTAAAATCACTTCAGTTGCAAGTGCAGATGATGTCCATGGGATGTAGCATGGTACCTATGATGTTTCCCGGTGTCCAGCAATACATGCCCCCAATGGGGATGGGAATGGGGATGGGGATGGGTATGGATATTGGCTTGAATCGCCCAATGCTGCCCTTCCCCTCGGTTTTAGCTGGCTCACCCATGACCAGACCAGCCGCAGCAGCTCATTTGGGTCCAAGGTTCCCTATGCCAGCATTTCATCTACCGCCTGTTTCTTCCGCTGATCCATCCAGAACCCAAGCAACCAACCAGTCAGATCCAGCATTAAACTCAATTGGCTTACAGAATCCCAACCCACTACAGGTCTTGAATTTCACTGATCCCTATCAACATTACCTCGGCCTCCACAACATGCAAGTACCTCCACCTCAGAATCAAGCCATGGCCCAGCCAAGTAGCAGCAAGGGAATTGAGAGTCTTGAAAATCACAAATCTGGTTGA 1557 0.5286 MNHCVPDFEMEEDDSIPTSSGLSRPNKHSPPEDELVELLWQNGQVVMQSQNQRSQKKSPPKFPVQDAVPPAGESTAGGIQPSAAVVAEEAANQLFMQEDEMASWLHYPLDDTFDRDFCADLLYPAPSANYAPASTVSQIPDDNRPEDKIPVAPRPPIPPARRMELDSSSKFLNFMHFSRSKARAESQPSTSDKTARESTVVDSSDTPAVGPGSRVSHGARRTAPVSDGNLGGRSMGGDAAADRDRELVTCEQAVTSSSGGSGASPESLGKPPADNRKRKARETEDNECSEDAEFESVDKKKQGHGSTSARRARAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCSMVPMMFPGVQQYMPPMGMGMGMGMGMDIGLNRPMLPFPSVLAGSPMTRPAAAAHLGPRFPMPAFHLPPVSSADPSRTQATNQSDPALNSIGLQNPNPLQVLNFTDPYQHYLGLHNMQVPPPQNQAMAQPSSSKGIESLENHKSG* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00586 518 PANTHER TRANSCRIPTION FACTOR PIF3 20 449 IPR044273 GO:0003700|GO:0006355
Eupl07g00586 518 MobiDBLite consensus disorder prediction 250 264 - -
Eupl07g00586 518 MobiDBLite consensus disorder prediction 1 81 - -
Eupl07g00586 518 MobiDBLite consensus disorder prediction 42 59 - -
Eupl07g00586 518 CDD bHLH_AtPIF_like 313 376 IPR047265 -
Eupl07g00586 518 MobiDBLite consensus disorder prediction 271 286 - -
Eupl07g00586 518 Coils Coil 319 339 - -
Eupl07g00586 518 MobiDBLite consensus disorder prediction 129 165 - -
Eupl07g00586 518 MobiDBLite consensus disorder prediction 490 518 - -
Eupl07g00586 518 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 316 391 IPR036638 GO:0046983
Eupl07g00586 518 MobiDBLite consensus disorder prediction 491 512 - -
Eupl07g00586 518 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 313 362 IPR011598 GO:0046983
Eupl07g00586 518 SMART finulus 319 368 IPR011598 GO:0046983
Eupl07g00586 518 MobiDBLite consensus disorder prediction 445 461 - -
Eupl07g00586 518 MobiDBLite consensus disorder prediction 179 318 - -
Eupl07g00586 518 Gene3D - 308 371 IPR036638 GO:0046983
Eupl07g00586 518 FunFam Basic helix-loop-helix transcription factor 308 371 - -
Eupl07g00586 518 Pfam Helix-loop-helix DNA-binding domain 317 363 IPR011598 GO:0046983
Eupl07g00586 518 MobiDBLite consensus disorder prediction 179 210 - -
Eupl07g00586 518 MobiDBLite consensus disorder prediction 439 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g00586 Eupl-Chr7 18022516 18032590 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00586 1 368 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 41.176 3.11e-67 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl07g00586 HLH 6.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g00586 - - nnu:104589147 660.218