Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00580 ATGTCGATACCAAGGTCGAGGCAGCAGCACCACCACCATCACTACCCGACTCTCGTCCTTCTTAGTCTCGTACTAACAATAGTCGAGGCTGCTGCTAATCATGAATCGCTCGCACTACTCTCTTGGCTTCACAGTTCTTCTTCTTCCTCTTCTTCTTCCGCCTTCCCAACTTGGAATCACCTAGATCCTAACCCTTGTAACTGGACTTACATAACTTGCTCTCCTCAAAGTTTCGTTACCCAAATCAATATTCAGTCTGTTCAGCTCGCACTACCTGTTCCTTTCAATCTCTCTACCTTTCTCTTTCTTCATACCCTTATCATCTCTGGTGCCAATCTTACCGGAACTATCCCACCTGAGATTGGAGACTGCGCTTCTCTTAAAACTATCGACCTTAGCGCCAACAGTCTTGTTGGTAGTATCCCGGCGAGTATTGGGAAGATTCAGAATCTGGAGAACTTGGTTCTTAACTCTAATCAGCTCACTGGGAAGATCCCAGGTGAGCTTGGTGATTGTGTCAGCCTCAAGAATCTACTTCTCTTTGATAATCGCCTTGGCGGGAATCTGCCAACCTTACTAGGTAAACTGTCGAGTCTTGAAGTACTTCGTGTCGGAGGCAACAAGGATATAGTTGGGAGGATTCCGGACGAACTTGGGGACTGCGAAAACCTGACTGTGTTGGGTCTTGCTGACACTAAGGTTTCTGGCTCCATACCTGCTTCACTGGGTAGGCTGAGCAAACTCCAGACGTTGTCTGTTTACACGACCATGCTTTCCGGTGAGATTCCACAAGAGATTGGCAACTGTTCTGAGCTTGTTAATCTTTATCTATACGAAAACAGTCTCTCAGGTGCGATTCCGTCAGAGCTCGGTAAGCTTCTGAAGCTGGAGAAGTTGCTGCTTTGGCAGAACAACTTGGTTGGGGCTATTCCGGAGGAGATGGGTAATTGTAGCAGCTTGAGGATGATCGACCTTTCATTGAATTCCCTTTCTGGAAGCATACCTTTGTCTTTCGGTCGCTTGTCGAAGCTCGAAGAGCTTATGCTCAGCGACAACAATGTTTCTGGCTCGATACCTTCTGTTCTTTCCAATGCTTCAAATTTATTACAGTTGCAGCTTGATACGAACCAGATTTCAGGTTTGATCCCACCAGAGCTTGGGATGTTGGTGAAGCTGAATGTTTTCTTCGCTTGGCAGAACCAACTAGAAGGCAGCATTCCTTCCACCTTGGCGGGTTGCAGAAGTCTGCAAGCTCTAGATCTTTCGCACAATTCCCTCACTGGAAACATACCTTCTGGACTGTTTCAGCTCCAGAACCTCACAAAGCTTCTCTTGATTTCTAATGACATTTCAGGTTCGATTCCATCAGAAGTTGGCAACTGTAGTTCTCTTGTTCGGCTGCGTCTTGGAAACAATAGGATCGGAGGAGAGATTCCAAGGGAAATTGGGGGTCTTAGGAGTCTTAATTTCCTTGATTTGTCTGCAAACCGTCTCATGGGGCCGGTGCCTGATGAGATTGGGAATTGCATAGAATTGCAGATGGTGAACCTGAGCAACAACTCGCTGGGGAGCTCTCTGCCTGCTTCATTGTCTTCTCTCTCTGGACTACAGGTCTTGGATGTTTCGCAGAACCATTTTGTGGGTCATATTCCGGCGAGCTTTGGCCGCCTTGTTTCCTTGAATAAGCTCGTGCTTAGTGGGAATTCCTTCTCTGGACCGATACCTCCGTCGCTCGGCCTCTGTTCAAGCCTCCAATTGCTTGATCTGAGCAGCAATGGGTTATCAGGTGGCATACCAACTGAATTGTGTCGGATTGAAGCTCTTGACATTGCTCTCAATTTGAGTGGTAATGCGCTTACTGGACCGATCCCTACCCAGATATCTGCCCTTAATAAGCTGTCTGTGCTCGACCTCTCACACAATAAGCTTGGAGGAGTTCTGACACCGCTTTCCGGGCTTGAAAACCTAGTCTCTTTGAACATTTCCTACAACAATTTCACTGGTTATCTTCCAGACAGCAAACTGTTCCATCAGTTATCAGCAACAGAGATAGCAGGAAACCAAGGCCTGTGTTCTTGGGGACGAGATTCGTGTTTCATGAGCAATGTTGCTGGGATGGAGATGTCAAACAAAAACAGTGAGCTTAGGAGGTCGCGGAAACTGAAGCTAGCAATTGCGTTGTTGATCACGATGACCGTTGCAATGGTCGTTTTGGGAACTATGGCAGTGATTCGAGCAAGGAGAGTGGCTAGACACGAGGACGATTCAGAGATGGGAGGAGGGGATTCATGGCCTTGGCAATTCACTCCATTCCAGAAGCTGAACTTTTCAATCGACCGGGTGCTGCGATGCCTAGTGGATGCTAATGTAATTGGGAAAGGATGCTCTGGCGTGGTTTATCGTGCAGATATGGACAATGGTGAAGTGATTGCAGTCAAGAAGTTGTGGCCAACTGCAATGGCCACTACGAACAACAGTGACGATGACATCTGTGGTGTTGGAGGTGTTCGAGATTCCTTCTCAGCTGAGGTGAAGACCCTTGGTTCTATCCGTCACAAGAACATTGTTAGGTTCTTGGGTTGTTGCTGGAATCGGAACACAAGGTTGCTTATGTATGACTACATGCCCAATGGGAGCTTGGGTAGCCTCCTTCATGAGAGGAGTGGTAGCTGCTTGGAGTGGGACCTGAGGTACCAAATTGTGCTGGGAGCGGCGCAAGGCCTAGCTTACCTACACCATGATTGTGTCCCCCCTATTGTTCACAGGGACATCAAGGCCAACAACATCCTCATTGGTCTTGAATTTGAACCTTACATTGCTGATTTTGGGTTGGCTAAGCTCGTGGATGATGGAGATTTCGCCCGGTCATCCAATACTGTTGCGGGCTCTTACGGATACATTGCTCCTGAGTATGGGTACATGATGAAGATCACTGAGAAGAGTGATGTTTATAGCTATGGAGTCGTAGTATTGGAAGTGTTGACGGGGAAGCAACCGATCGATCCGACAATACCAGATGGACTTCATGTGGTGGATTGGGTGAGGCAGAGGAGGGGAGGTATAGAGGTCCTCGATCCCAGTCTACGAGCTCGACCTGAATCGGAGGTGGAAGAGATGATGCAGGCATTAGGTGTGGCCTTACTCTGTGTCAACCCCTCTCCTGATGAGAGACCAACCATGAAGGATGTGGCAGCCATGCTCAAGGAGATCAGGCACGAGCGAGAGGAGTACGCTAAGGTGGATGCCCTACTCAAGGGGTCTCCAGCAACAGATCGCGATCGCGAAGAGAGTAACAGTAACGGTCCAACAGCATCGTCGTCATCGACAACAATGGCTTGCCCCTACCCACATAGCAATAACACCAGCTTCTCTGCATCCTCACTTCTATACTCCTCTTCCTCAAATGCCAAAACGGCTTTCAAGTAA 3426 0.4816 MSIPRSRQQHHHHHYPTLVLLSLVLTIVEAAANHESLALLSWLHSSSSSSSSSAFPTWNHLDPNPCNWTYITCSPQSFVTQINIQSVQLALPVPFNLSTFLFLHTLIISGANLTGTIPPEIGDCASLKTIDLSANSLVGSIPASIGKIQNLENLVLNSNQLTGKIPGELGDCVSLKNLLLFDNRLGGNLPTLLGKLSSLEVLRVGGNKDIVGRIPDELGDCENLTVLGLADTKVSGSIPASLGRLSKLQTLSVYTTMLSGEIPQEIGNCSELVNLYLYENSLSGAIPSELGKLLKLEKLLLWQNNLVGAIPEEMGNCSSLRMIDLSLNSLSGSIPLSFGRLSKLEELMLSDNNVSGSIPSVLSNASNLLQLQLDTNQISGLIPPELGMLVKLNVFFAWQNQLEGSIPSTLAGCRSLQALDLSHNSLTGNIPSGLFQLQNLTKLLLISNDISGSIPSEVGNCSSLVRLRLGNNRIGGEIPREIGGLRSLNFLDLSANRLMGPVPDEIGNCIELQMVNLSNNSLGSSLPASLSSLSGLQVLDVSQNHFVGHIPASFGRLVSLNKLVLSGNSFSGPIPPSLGLCSSLQLLDLSSNGLSGGIPTELCRIEALDIALNLSGNALTGPIPTQISALNKLSVLDLSHNKLGGVLTPLSGLENLVSLNISYNNFTGYLPDSKLFHQLSATEIAGNQGLCSWGRDSCFMSNVAGMEMSNKNSELRRSRKLKLAIALLITMTVAMVVLGTMAVIRARRVARHEDDSEMGGGDSWPWQFTPFQKLNFSIDRVLRCLVDANVIGKGCSGVVYRADMDNGEVIAVKKLWPTAMATTNNSDDDICGVGGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGSLLHERSGSCLEWDLRYQIVLGAAQGLAYLHHDCVPPIVHRDIKANNILIGLEFEPYIADFGLAKLVDDGDFARSSNTVAGSYGYIAPEYGYMMKITEKSDVYSYGVVVLEVLTGKQPIDPTIPDGLHVVDWVRQRRGGIEVLDPSLRARPESEVEEMMQALGVALLCVNPSPDERPTMKDVAAMLKEIRHEREEYAKVDALLKGSPATDRDREESNSNGPTASSSSTTMACPYPHSNNTSFSASSLLYSSSSNAKTAFK* 1142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00580 1141 SMART serkin_6 785 1067 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl07g00580 1141 SUPERFAMILY Protein kinase-like (PK-like) 764 1067 IPR011009 -
Eupl07g00580 1141 SMART LRR_typ_2 557 581 IPR003591 -
Eupl07g00580 1141 SMART LRR_typ_2 341 365 IPR003591 -
Eupl07g00580 1141 SMART LRR_typ_2 533 556 IPR003591 -
Eupl07g00580 1141 SMART LRR_typ_2 293 317 IPR003591 -
Eupl07g00580 1141 SMART LRR_typ_2 485 509 IPR003591 -
Eupl07g00580 1141 SMART LRR_typ_2 413 437 IPR003591 -
Eupl07g00580 1141 SMART LRR_typ_2 653 678 IPR003591 -
Eupl07g00580 1141 SMART LRR_typ_2 196 221 IPR003591 -
Eupl07g00580 1141 SMART LRR_typ_2 148 172 IPR003591 -
Eupl07g00580 1141 MobiDBLite consensus disorder prediction 1099 1118 - -
Eupl07g00580 1141 PRINTS Leucine-rich repeat signature 416 429 - -
Eupl07g00580 1141 PRINTS Leucine-rich repeat signature 630 643 - -
Eupl07g00580 1141 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 487 1068 - -
Eupl07g00580 1141 SUPERFAMILY L domain-like 382 699 - -
Eupl07g00580 1141 Pfam Protein kinase domain 788 1064 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl07g00580 1141 FunFam Nuclear pore complex protein NUP107 32 189 - -
Eupl07g00580 1141 ProSiteProfiles Protein kinase domain profile. 785 1075 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl07g00580 1141 ProSiteProfiles Leucine-rich repeat profile. 632 654 IPR001611 GO:0005515
Eupl07g00580 1141 Gene3D Phosphorylase Kinase; domain 1 770 874 - -
Eupl07g00580 1141 Pfam Leucine rich repeat N-terminal domain 32 74 IPR013210 -
Eupl07g00580 1141 Gene3D Transferase(Phosphotransferase) domain 1 875 1086 - -
Eupl07g00580 1141 MobiDBLite consensus disorder prediction 1079 1098 - -
Eupl07g00580 1141 Gene3D Ribonuclease Inhibitor 28 95 IPR032675 -
Eupl07g00580 1141 Gene3D Ribonuclease Inhibitor 333 433 IPR032675 -
Eupl07g00580 1141 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 768 874 - -
Eupl07g00580 1141 SUPERFAMILY L domain-like 46 402 - -
Eupl07g00580 1141 FunFam Predicted protein 190 288 - -
Eupl07g00580 1141 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 415 702 - -
Eupl07g00580 1141 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 875 1085 - -
Eupl07g00580 1141 Pfam Leucine rich repeat 295 353 IPR001611 GO:0005515
Eupl07g00580 1141 Pfam Leucine rich repeat 511 569 IPR001611 GO:0005515
Eupl07g00580 1141 Pfam Leucine rich repeat 126 185 IPR001611 GO:0005515
Eupl07g00580 1141 MobiDBLite consensus disorder prediction 1079 1118 - -
Eupl07g00580 1141 ProSiteProfiles Leucine-rich repeat profile. 415 437 IPR001611 GO:0005515
Eupl07g00580 1141 Gene3D Ribonuclease Inhibitor 96 231 IPR032675 -
Eupl07g00580 1141 Gene3D Ribonuclease Inhibitor 434 702 IPR032675 -
Eupl07g00580 1141 Gene3D Ribonuclease Inhibitor 232 332 IPR032675 -
Eupl07g00580 1141 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 289 397 - -
Eupl07g00580 1141 ProSitePatterns Serine/Threonine protein kinases active-site signature. 919 931 IPR008271 GO:0004672|GO:0006468
Eupl07g00580 1141 ProSitePatterns Protein kinases ATP-binding region signature. 791 814 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g00580 Eupl-Chr7 17786763 17790347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00580 33 1086 Receptor kinase-like Gene Family AT5G56040 48.644 0.0 986
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Eupl07g00580 Pkinase 1.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g00580 - - nnu:104602140 1709.12