Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00574 ATGGCGCTTTCTCTGAGGTGGTTCTCTCTGTGTTTTTTGCTTCTATTGCTGTTTGTTGGTGTAATGGCGGGAGTAGGGAGAGAGGAGATCTTGGATTCGAGGGCTGGAGAAACAGAGCAGTTGCAGAGCTCAAAGAACTCATCAATGGCGGAGAGGTCAGAGGAGGCTGAAGCCCGGAATGAGCACGCCGTCGACAATCCAGATGATGTTGCCTCAATGGTGGAGATGAGCATACGCAACAGCACAGAGAGGAGGAACTTGGGTTTTCTCTCCTGCGGCACTGGCAATCCAATTGATGACTGCTGGCGGTGTGATCCGCAATGGCAGCTCCACCGTAAGCGCCTCGCCGACTGTGGCATTGGCTTCGGACGCAATGCCATTGGTGGTCGTGACGGTCGCTACTATTACGTCACTGATGACAGTGATGATGACACTGTCAACCCTCGACCTGGAACGTTGCGCTATGCTGTCATTCAAGACAAGCCTCTGTGGATTGTTTTCAAGAGGGACATGGTGATCACTCTTAAGCAGGAGCTCATCATGAACAGCTTCAAGACCATTGATGGCCGTGGTTTCAATGTCCACATTGCCAATGGGGGGTGCATTACAATTCAGTTCGTCACCAATGTCATCATCCACGGCCTCCATATCCACGATTGCAAGCCCACTGGCAATGCCATGGTTCGAAGCTCCCCGACTCACTATGGATGGAGGACCGTGGCTGATGGTGATGCCATCTCAATCTTTGGATCCAGCCACGTCTGGGTTGATCACAACTCCCTCTCCCACTGTGCAGATGGCCTTGTCGACGCCGTCATGGGCTCAACTGCGATTACCATCTCTAACAACTACTTCACCAATCACAATGAGGTGATGCTGTTGGGTCACAGTGACTCCTACACAAGAGACAAGCAGATGCAAGTGACAATTGCTTATAACCATTTTGGAGAAGGTCTCATCCAGAGGATGCCAAGGTGTAGGCATGGGTATTTCCATGTGGTGAACAATGACTACACTCACTGGGAAATGTATGCCATTGGTGGAAGTGCAGATCCCACTATCAACAGCCAGGGAAACAGATACCTTGCCCCAGGCAACCCTTTTGCCAAAGAGGTTTATACAACTAATAATCTCCCTGTTTTTGTATATCTCTCTGTTAATCCATCCATCATCTCACAATGTGATAATGTTGTAATTGGATTTATGGTTGTGCAGGTGACGAAGAGAGTGGAGACATCCGCAAGCCAGTGGAAGAACTGGAACTGGAGGTCGGAGGGGGATCTGCTGCTGAATGGAGCCTATTTTACCCCGTCAGGAGCCGGAGCCTCAGCCAGCTATTCAAGGGCCTCAAGTCTGGGAGCCAAGTCATCTTCCATGGTGGCCTCCATTACTTCTGGTGCTGGTGTTCTCTCTTGCCGCCGGGGCTCCCAGTGCTAA 1437 0.508 MALSLRWFSLCFLLLLLFVGVMAGVGREEILDSRAGETEQLQSSKNSSMAERSEEAEARNEHAVDNPDDVASMVEMSIRNSTERRNLGFLSCGTGNPIDDCWRCDPQWQLHRKRLADCGIGFGRNAIGGRDGRYYYVTDDSDDDTVNPRPGTLRYAVIQDKPLWIVFKRDMVITLKQELIMNSFKTIDGRGFNVHIANGGCITIQFVTNVIIHGLHIHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHVWVDHNSLSHCADGLVDAVMGSTAITISNNYFTNHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPGNPFAKEVYTTNNLPVFVYLSVNPSIISQCDNVVIGFMVVQVTKRVETSASQWKNWNWRSEGDLLLNGAYFTPSGAGASASYSRASSLGAKSSSMVASITSGAGVLSCRRGSQC* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00574 478 MobiDBLite consensus disorder prediction 35 66 - -
Eupl07g00574 478 PRINTS Pollen allergen Amb family signature 178 194 IPR018082 -
Eupl07g00574 478 PRINTS Pollen allergen Amb family signature 242 263 IPR018082 -
Eupl07g00574 478 PRINTS Pollen allergen Amb family signature 118 135 IPR018082 -
Eupl07g00574 478 PRINTS Pollen allergen Amb family signature 322 341 IPR018082 -
Eupl07g00574 478 PRINTS Pollen allergen Amb family signature 344 363 IPR018082 -
Eupl07g00574 478 PRINTS Pollen allergen Amb family signature 142 167 IPR018082 -
Eupl07g00574 478 Gene3D - 95 471 IPR012334 -
Eupl07g00574 478 PANTHER PECTATE LYASE 18-RELATED 66 476 IPR045032 GO:0030570
Eupl07g00574 478 MobiDBLite consensus disorder prediction 50 66 - -
Eupl07g00574 478 SUPERFAMILY Pectin lyase-like 72 472 IPR011050 -
Eupl07g00574 478 Pfam Pectate lyase 178 359 IPR002022 -
Eupl07g00574 478 SMART amb_all 170 367 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g00574 Eupl-Chr7 17500483 17505750 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00574 29 478 Polysaccharide Lyase AT4G13710 72.588 0.0 683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g00574 K01728 - nnu:104587909 764.222