Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00564 ATGTTTCATTTATTTATTTATCTTTTTATTGTCCTGGCATTTAGATTAAGGAGTATACTTTGTTTCAATGATTCTGCAAAAGTATTTATTTATTTATTTTTCAATTTTTTGCCTCGTTTAAATGAGAAGAAGTCGTCCTTGCCATGTAATGTAAAGTTGAATTTATTGGTGGTTATTGATTCTTTTGCTATTTTTAATCCTCAGATGCAGAATATGGAGGACATAGACATTGATCAGGTAATGGACGTTCCTGATACTCCTGATAGATTGGCCACACGGAAGATTAATAATGACGGGGAAGATATTGAGAAAGTAGTCAATTCATCTGTGGCTGGTGATTTTGGAATTTCTGACTTATTGGATAGTGGAGTTCCCAATCGGGTAAGGGGCCGTTGCAGGTTAAACACGGAAAACGGAAACAACAGTAGGTTGTATTCTCGTCCTCGGGGAGATATTAGTATTCGTGATGAAACTGAACAAAGCAGTCGCTCCATTGGTACCATGACAGATAGTTTATCTGTTTCTGAGAATGCTCTTCTGTTTAGGAGATTAATGGCAGAAAAAGTTTCTGCACAACCTCAACCTATGGAATATGTGCCTTCCAGTAGTGATAGAGCTAAACTTGATGGTGACACTTCTGCTATTAGTGAAGTGTTAGGGTCTGATGTCAAAGTTCAAGATAGAAGTAGGGGAAAAATGATTGATTCGATATCAAGCCAGAAATTCTTTTCTAATACCTCATTTTCCAATAATGGTAGAAATATGAGAAGTCAGATGATGCTTCGAGGTAACACAAGATCTGATACAAGAAAAGCCACTTGCTCTGATGTTCCTCCTAGATCTTCTGCTTGTGAAGACGACAACGGTGTTATGGATTTGACTGGGCAGAATGAGTATACTGGAATACCTGAAAGGGTTTGTTCACGTGGCACATCAAAAGATCTTGTCCAAGAGATTAGAAAAGTATCAACAGCAGCTAGCTGTTCTTCTTCACGTAGTATTACAAATTCTTCAAAAGTGTCCTCCAACGGCTGTAAGGGGAAAATAAATACAGATGATGGTGCAAACAACAGTGCTTATGTTGGTGTGGATTGTGGAAAAGGGATTGATTTATCCAGTGAATCTAAACCCAAAATAGAACAGATCATGCTGAGACCTCTGCAGTCTATTACCTCACCTAGGAAAACTGGGAAAAAGAGGTTGGTGCTCAATGGATGTATCTCTCCGTATAATATAGCAAGGGCTAAACAAACAGCTGAAAGCCATGATAAGTGTTCCACAGATGGTAAACAGGATGATATTGGGAAAGTAATCTCTAACTGTGAGACTCCATCGAGTCAGATACACATTGTTAGCCCTAATTCTGAAGGCAATCAAACTGATAGAATAGATAGAATGAAGGGAAAGGGGATAATGGCGGAGTTGAGTCCAGCAAAAGATTATGATGCCAAAACCATGCCTTTGTTGAGCAGAAGTTCGCTAAATCCTACGGAAGAGGTTAATGGAATTGGAGATGCCAGTGGAGATGTTTTCAGATACTTGGAAAAAAAGGGGGGTTGGAGAAGCACACGTAATCGTTCAAAAAAAACATCTTCGTCCGATGAGGTCAGCTGTCTTTCCAGGAGAAATGGTGGTGTTGGCCATTTATTTGATCGAAGCCGTGAAAACGGCATGGAAAATAGAGATTGTGTCAATAGAACAAATACCAGTCTTGAAACTGATTCTCTTGACGTTAGTGATCCAGTTTCTTTTCAGCATGGGCTTACTACACGTTCAGTTCGAGCATCTTCCAGTGTTATGTCCGAGTTAGATCGAGAAAATGGACAGCATCATGGAGCAAATAAGTTAACGAAAAGACACAAGAAACATGCCTCATCTCGCGGTAATTTTAGTGAACACTCTACTTCGACTTTTGATGATTCAGAAGTCACTTATCTCTGGTCTTCTGGGGAACCTACAAATGCTAGATCTATGAGAAGCCGAGATATTCATCATCGTGGCATATCAGGTCCAGTTATAGAAATTGATGAGCTGTCCCCTGAAGTAAGATGCCGAAATCCTGAAGATACCAGTCAAATGGTTAATGATGACTCAGATGTTAGGGCAAGACAAGTGGAAGCAGATGAGATATTGGCTCGTCAACTTCAAGAACAAATGTATCGTGAGTTGCAAGGAGTTGGAGGCGGAGAGATTGATGCAAGTATAGCATGGACATTGCAGCAGGAGGAGGATGTGCAGCGTGCTTCTTCCCTTCAGAGTCAGCGTCTATTGCATCCTAGGGACTCATCGATTTCACATTTATATAGACAATATCCATCAAGGTATTTTCAGAACTCTTCAGTTCGGTCCGCAAACCGTGCTCGAGTTCCTACCTCTGCAAGAATGACACGATTGCGGAATAGCTTTCATGGCCATTATCCTACAGTATCATCTGGAGAGAGGAGTTTTCAGTTTCCCCCAGATATGGATTTTGAGATGAGAATTCATATATTGGAAGCATTGGAAGATGCAGTTGGCAATGGTAATGGCACAATGGCTGGTGACTTCTTTCAAGTTCAACGAGATTTTAATGAAAATGATTATGAGATGTTATTGGCCCTTGATGAGAACAATCACCAACATGTTGGTGCATCTCTCGACCAGATTAATGGCTTGCCACAGTCAACAGTCCAGACAGTGAACTTTGAAGAAGCTTGTGCAATCTGCCTTGAAACTCCAACAACTGGAGATACCATTCGCCATCTCCCCTGCTTACACAAATTTCATAAAGATTGCATTGATCCGTGGCTGAGAAGAAGAACATCATGTCCAATTTGCAAGTCATGCATCACTTGA 2835 0.4046 MFHLFIYLFIVLAFRLRSILCFNDSAKVFIYLFFNFLPRLNEKKSSLPCNVKLNLLVVIDSFAIFNPQMQNMEDIDIDQVMDVPDTPDRLATRKINNDGEDIEKVVNSSVAGDFGISDLLDSGVPNRVRGRCRLNTENGNNSRLYSRPRGDISIRDETEQSSRSIGTMTDSLSVSENALLFRRLMAEKVSAQPQPMEYVPSSSDRAKLDGDTSAISEVLGSDVKVQDRSRGKMIDSISSQKFFSNTSFSNNGRNMRSQMMLRGNTRSDTRKATCSDVPPRSSACEDDNGVMDLTGQNEYTGIPERVCSRGTSKDLVQEIRKVSTAASCSSSRSITNSSKVSSNGCKGKINTDDGANNSAYVGVDCGKGIDLSSESKPKIEQIMLRPLQSITSPRKTGKKRLVLNGCISPYNIARAKQTAESHDKCSTDGKQDDIGKVISNCETPSSQIHIVSPNSEGNQTDRIDRMKGKGIMAELSPAKDYDAKTMPLLSRSSLNPTEEVNGIGDASGDVFRYLEKKGGWRSTRNRSKKTSSSDEVSCLSRRNGGVGHLFDRSRENGMENRDCVNRTNTSLETDSLDVSDPVSFQHGLTTRSVRASSSVMSELDRENGQHHGANKLTKRHKKHASSRGNFSEHSTSTFDDSEVTYLWSSGEPTNARSMRSRDIHHRGISGPVIEIDELSPEVRCRNPEDTSQMVNDDSDVRARQVEADEILARQLQEQMYRELQGVGGGEIDASIAWTLQQEEDVQRASSLQSQRLLHPRDSSISHLYRQYPSRYFQNSSVRSANRARVPTSARMTRLRNSFHGHYPTVSSGERSFQFPPDMDFEMRIHILEALEDAVGNGNGTMAGDFFQVQRDFNENDYEMLLALDENNHQHVGASLDQINGLPQSTVQTVNFEEACAICLETPTTGDTIRHLPCLHKFHKDCIDPWLRRRTSCPICKSCIT* 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00564 944 ProSiteProfiles Zinc finger RING-type profile. 899 940 IPR001841 -
Eupl07g00564 944 MobiDBLite consensus disorder prediction 264 289 - -
Eupl07g00564 944 FunFam RING/U-box superfamily protein 864 944 - -
Eupl07g00564 944 Pfam Ring finger domain 898 940 IPR001841 -
Eupl07g00564 944 SMART ringv_2 898 940 IPR011016 GO:0008270
Eupl07g00564 944 MobiDBLite consensus disorder prediction 593 635 - -
Eupl07g00564 944 MobiDBLite consensus disorder prediction 133 147 - -
Eupl07g00564 944 CDD RING-H2_PA-TM-RING 899 940 - -
Eupl07g00564 944 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 865 944 IPR013083 -
Eupl07g00564 944 MobiDBLite consensus disorder prediction 520 540 - -
Eupl07g00564 944 MobiDBLite consensus disorder prediction 132 168 - -
Eupl07g00564 944 PANTHER SI:CH211-59O9.10 519 943 - -
Eupl07g00564 944 SMART ring_2 899 939 IPR001841 -
Eupl07g00564 944 SUPERFAMILY RING/U-box 892 943 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g00564 Eupl-Chr7 15931568 15974169 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00564 634 944 C3H Transcription Factor Family AT1G04790 48.113 1.07e-73 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g00564 - - nnu:104587902 809.675