Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00558 ATGATAAGCACTAAAGAGTTTCTAACATACAAGCGAAAGCAAAAGACATCGAGATTTAGGGGACCTAATTCATCTTCCATATCTCCAAGTGATACTCTTTCAACAAGACAAGGCCAGCATGCTGAATCAAGTAAAAAGTCCTTATTGGAGAATCAGAAAGGAGATGCTAGGCCCTGCATTAAATGTGCTACCTGTGATGTTGATGGCATCTTGCTGCACTGTGATAGCTGCCCCCGAACTTATCATCTTCAATGCATTGATCCCCCCATCAAGCATATTCCTCGTGGGCGATGGTTATGCTCTGATTGTATTAAACAACGTGATTCTGGAAAGTCTTTGCAGCCGCAAGTTCGAAAACCGGGGAAACTAAGGGCAAGGAAACTTATCGAGGGATCTGAGATGGGACCAATGACACTGCGCTCTCGTAAAGTGCTTCGGACGATAAACCCTGGTGAGGTTCCCTCAAGGAAGGAGACAGATGGCTTCCTTCAATTAGATGCATTGCCTGAAAAGATGTCAAGTTACATTAAGATAGACTTACGTTCATACATGAATTTTGGCACTGCACCCAAGGGTGCAGACACTGAAGGGAGGTCAATCTCTCCATCAGTAGAAATGGACACTGAGAAGAAAATGAGTTCTGTATTCTCAGATTCATCTATCGAAATAAAGTGCAGCTCTGAATGTCCAAGTGCCTTTATTTTTAAGACATCTCATTCAGAAACCACTGAATCACTCTCCCAAGATAAGTCCAATTTAGTGAGCAGTGACGGGCCTTTGACAGAGAAGCTTAGCACCCCACTGATTACTTTCAGTCGAAGAACTAAAAAGAAGGATGTGAATGGGATACAAAACAAGCTGATAATTGTGGAGAAAAAATCTTCAGTGGTCAATCAAAGCAACTCTGCATCTGGTATAGGCAGTTCATGTGAAGACGCCTCTCAAAAATACAGTTCTGTGGATCAGTCAACAGCTTTAAAAATGTTAAGGGAAGATCCGGACGTGATCCATTTGGCTGTTCAAAGACAAGATAAGATAAGCGACAGAGATGAAGATGTCAGTGATACATCCACTTTAGTAGGAGGTGCTCTAGAAACTAAGATTGGCAAGCATGTGGAAAAGCAGTTTTCTTGGGGATGCATGTCAGAAGATGGATCACCTATTGCTGAGTGTGTACAGGGCCTGAACCGCCAGCATCCTTCTTCTACGCACTCCAAACATGCTGCGGATGTCCAGGACGACCAACTTATAAAATCTATAGAAGCATCTTCAACAGATGTGATGACAGACACCTTTTTTAAGGTGGTAAATGAAGAGAAACAGTTACCCAAAGATGGAGCTTCTACTGGAATGAAATCTCAAATTATGTTGAGTGACCATGTGAAAACAACAATCAAGCTTGATGATGTTTTTGGAGATGGAGCATCCCTGGCCCACCTGGACCTATCTGTTACACCTGATTCACGTGGTATGCTGGAGTACACTACAGATGTGGAACCGAGCTGCCACAAAACATGTATTGATGCCGCACCTGAAACTTTTCTGGACTCAAATTCAGTGAGCCCAAAAGATGCCACTGTTTTGCATGAGGTAGTGACTCTAAGAGGCAAACCTTCAGAATTGTTAGGAAATGCGGATGAGACACTGCGTGAGACACTATCTTCCCATTATACACTGACAGGTAGAAACCCATGCAGTTATATGGATGGTAAGGATTCTCCTGTTCTCTCGATGGGCATATCTCTACAGGATCCATGTCAGCAGAGCCTTTCAGATAATGTAATCAATCAGATGGTCCCATTAGCATGTATAGCACCAGAGGCACCTGCTTGCGTGGATTTCCATGGAAGAATCTTCCCTGAGTCAGGATGTGAAAGGAATCAGTGCAAACAAATGCCATCCAAATCCAAATCTTCTCTTTTCTCACCTCATTTTCTAGGTCTATCACTGCTAACGAATCCTGAAGCCGCAGTTAATACCTTAAAGGAAACCCCCTGTGTATCATCATTGCCAAGCTTTAGCTTTAAAAATAGAGGCGTCATTCTAGATATGCTGCCCCAATCTGCCTCAGACCAGAATTTGTCATTTCTAAGACAAAAGCAGATGCTTCAGAGCATTGTAACAAGAGCAGATGCATTAAAAGGAAGTCAAGGATGTTCATTGGCTAAGTTCAAGGAATGCCCAACTGCATGGTCAGAAGAAGAGTTGGATTTTCTTTGGATAGGTGTGAGGAGACATGGAAGGGGAAATTGGGATGCTATGTTAAGGGACTCGAGGTTGTGCTTCTCGAAGTGGAGAGTAGCAGAGGACTTAGCTGAGCGGTGGGATGAAGAACAATCAAAAATTTTGAATGGCACGCTGATTCAACCGTTGAGGTTGTCAAAACCACCAGATATCTCTCCAGGCATAAGCAGTGGTTTGTTGCCAAGAGCAGGAGTGGTTGGTATTCAATGTAGCAGTTATCCCTCTGAATGTCACACACCAATGAGATCTCAAGCCTTGACTGATGAAACTCGACTTTCTCTGGGAGATGCATATGTTCACAGGGAGGTGAATATCCCAAAGAGGCGTCCATTAAATTTGCCAGGCCAGTATACTACGCATCCAACACTAGCAAAAAACAGCAGTCCAGACAAGGCTTCTTGTGTTATTAATAGTCGACTAACAAATTCAGTTCTTCAGAGAATTGGTACCAAACAGCTCCACAAATCTTCTAGAGGTCAAAGCAGTTGCTCATATTCAGATTGCGAACGGGCAAGATATGGTAGAGGACAGGCAAGATATGGTAGAGAGTACTCTATTCTTCAGCAGGAACCTGTTGAAAGATCAGCAAGTCATGGTGGGGGATGGAGTGGAGAGTTGTTCAACAGTGGGGAGAGCAAGGGAACTCTGAACGATTCTTTTTTGAGAAATGACCCATCTACTAGTCTGCCAGCTAAGGATAATCTGCCTCATTGGCTGAGAAAAGTGGTTAGTGTGACTCCTCCAAGGCCACCAGAGCCAGCACTACCTTCTGCTGTTTCAGTTGTTACACAGTCAGTGAGCTTGCTTCCTAACGACAAGCATCAGGTTATCTCACCTTTTACCGATCCTGGAGCCCTGCCGGTTCCAACTACAGATCTTCGTCAAAGGTCGAGGAAAAACAGAACCAATAGTAAGTTAGGTCATCTAAGAGCATCTGACATACCATCATCTATTGCCCATTCCACCAGCATTTCCTTGATGGAGACTAGGTGCAGTCTTCTTTCAACAATGGGCTCAAACTCTCTAATCTCTGCATCAGATAATAGAATCTTGAATCAGAACAGGTCAGCAGATTTGAGCCTCACATGTTCTTATCCTGTTACTAGACTAAATGACTTGATCATCATTGACAGTGATGCATCTTCCGAGGAGACAATATCAGATGATCAAAACGGTAGGCCTTAA 3429 0.4348 MISTKEFLTYKRKQKTSRFRGPNSSSISPSDTLSTRQGQHAESSKKSLLENQKGDARPCIKCATCDVDGILLHCDSCPRTYHLQCIDPPIKHIPRGRWLCSDCIKQRDSGKSLQPQVRKPGKLRARKLIEGSEMGPMTLRSRKVLRTINPGEVPSRKETDGFLQLDALPEKMSSYIKIDLRSYMNFGTAPKGADTEGRSISPSVEMDTEKKMSSVFSDSSIEIKCSSECPSAFIFKTSHSETTESLSQDKSNLVSSDGPLTEKLSTPLITFSRRTKKKDVNGIQNKLIIVEKKSSVVNQSNSASGIGSSCEDASQKYSSVDQSTALKMLREDPDVIHLAVQRQDKISDRDEDVSDTSTLVGGALETKIGKHVEKQFSWGCMSEDGSPIAECVQGLNRQHPSSTHSKHAADVQDDQLIKSIEASSTDVMTDTFFKVVNEEKQLPKDGASTGMKSQIMLSDHVKTTIKLDDVFGDGASLAHLDLSVTPDSRGMLEYTTDVEPSCHKTCIDAAPETFLDSNSVSPKDATVLHEVVTLRGKPSELLGNADETLRETLSSHYTLTGRNPCSYMDGKDSPVLSMGISLQDPCQQSLSDNVINQMVPLACIAPEAPACVDFHGRIFPESGCERNQCKQMPSKSKSSLFSPHFLGLSLLTNPEAAVNTLKETPCVSSLPSFSFKNRGVILDMLPQSASDQNLSFLRQKQMLQSIVTRADALKGSQGCSLAKFKECPTAWSEEELDFLWIGVRRHGRGNWDAMLRDSRLCFSKWRVAEDLAERWDEEQSKILNGTLIQPLRLSKPPDISPGISSGLLPRAGVVGIQCSSYPSECHTPMRSQALTDETRLSLGDAYVHREVNIPKRRPLNLPGQYTTHPTLAKNSSPDKASCVINSRLTNSVLQRIGTKQLHKSSRGQSSCSYSDCERARYGRGQARYGREYSILQQEPVERSASHGGGWSGELFNSGESKGTLNDSFLRNDPSTSLPAKDNLPHWLRKVVSVTPPRPPEPALPSAVSVVTQSVSLLPNDKHQVISPFTDPGALPVPTTDLRQRSRKNRTNSKLGHLRASDIPSSIAHSTSISLMETRCSLLSTMGSNSLISASDNRILNQNRSADLSLTCSYPVTRLNDLIIIDSDASSEETISDDQNGRP* 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00558 1142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 117 IPR013083 -
Eupl07g00558 1142 ProSiteProfiles Zinc finger PHD-type profile. 59 106 IPR019787 -
Eupl07g00558 1142 PANTHER PHD FINGER PROTEIN 19 321 - -
Eupl07g00558 1142 SUPERFAMILY Homeodomain-like 729 776 IPR009057 -
Eupl07g00558 1142 MobiDBLite consensus disorder prediction 19 45 - -
Eupl07g00558 1142 SUPERFAMILY FYVE/PHD zinc finger 56 109 IPR011011 -
Eupl07g00558 1142 CDD SANT_TRF 731 775 - -
Eupl07g00558 1142 MobiDBLite consensus disorder prediction 1 50 - -
Eupl07g00558 1142 ProSitePatterns Zinc finger PHD-type signature. 59 103 IPR019786 -
Eupl07g00558 1142 Gene3D - 692 795 - -
Eupl07g00558 1142 SMART PHD_3 61 104 IPR001965 -
Eupl07g00558 1142 Pfam PHD-finger 59 105 IPR019787 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00558 62 190 PHD Transcription Factor Family AT5G12400 29.286 6.83e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Eupl07g00558 PHD 4.4e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g00558 - - nnu:104587900 696.812