Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00504 ATGGCGCAGAGTAACTGGGAAGCAGATAAGATGCTTGATGTTTATATTTATGATTATTTGTTGAAAAGAAATTTGCATGCTTCGGCGAAGGCCTTCATGACAGAAGGGAAGGTTGCTGCAGATCCAGTGGCGATCGATGCTCCCGGAGGGTTTCTCTTTGAATGGTGGTCTGTCTTTTGGGACATCTTCATTGCAAGGACAAACGAGAAACATTCTGAGGTTGCTGCAGCCTATATAGAGGCGCAGCAAATCAAGGCGAGGGAGCACCAGCAACAGCTGCAAATGCAGCAATTGCTGCAGCAACGCCATGTTCAATTGCAACGTAGGGATGCTAATCATCCTTCCCTCAGTGGTCCAATAAATGCGATGAACTCTGAAGGAATGCTGGGGCAGTCTCAAGCCAGTGTATTGGCAGCAAAAATTTATGAAGAACGCTTGAAACACCCTCACTCAATGGATTCAGAGACTCCCCCACAACTTATTGAGGCTGGCAGAATGGCCCTTTTGAAATCAGCATCCAATCATCCGGGTCAGTTGGTCCAAGGTAATCCGGGAAGTGTGTCTGCAGCGTTGCAGCAAATTCAGGCACGAACTCAACAGACCACTGACATCAAGAGCGAAGTTAACTTAGGTGTAACTCAAAGATCTTTGCCTATGGATCCTTCATCAATATATGGTCAGGGGATTATGCAGGCAAAATCTGGACTAGGCAGTGCAGGATTGAACCAAGGTGTGAGTGGTCTTCCATTGAAGGGTTGGCCTTTAACTGGCATTGATCAACTACGCCCAAGTTTAGGTGCACAAGTACAGAAGCCTTTTCTACAGACCACCCCAACTCAGTTTCAACTTTTGACTCCGCAACAACAACAGCAGGTCTTAGCGCAGGCTCAGGCACAAGGCAACCTTGGTAGTTCACCCAACTATGGAGATATGGATCCACGGAGATTTAGGGTATTACCTAGGGGAAACATGAATGCAAAAGATGGTCAAACTACAGGAAATGATGGATCTATAGGTTCTCCAATGCAATCAAGTTCACCGAAGGTTAGAGTACCTCCTCAAGATCAAGCAGAATATCTAATGAAGATGAAGATGAACCATATGCAACAGCCTTCCTCTCAGCAACAACCGGACCAGCTGCAGCAGCAGCAGCAGCAGCAACTGCAACAGAATAACAGAAAAAGGAAACAACCTTCTTCTTCTGGAGCTGCTAACAGTACTGGTACGGGAAATACAGTGGGGCCTTCACCTAACTCCCCACCATCAACTCCATCGACTCATACACCTGGTGATGGGGTGGCTATGGCGGGTAGTTTGCAGCATGTTAACAGTATGCAGAAAAGTTTAATGATGTATGGTCCAGATGGAACAGGTGGTCTTGCATCATCTTCAAATCAGCTGGAAGACATGGAACATTTTGGAGACGTTGGTTCCTTGGACGATAACGTGGAATCTTTCCTCTCTCATGATGATGGTGATGGAAGGGATTTGTTTGGCACATTGAAACGTAGTCCCACTGAGCATAATACAGAGTCTTCGAAGGGTTTCACATTCAATGAAGTTGGTTGTATACGCACAAGCAGTAGCAAAGTTGTCTGCTGTCATTTCTCATCAGATGGAAAGCTGTTGGCTAGTGCTGGGCATGAGAAGAAGGCTGTTCTTTGGAATATGGACACACTGCAAACAGAGAGTACTCCAGAAGAACACGCTCTTATAATTACAGATGTTCGTTTTAGACCAAATTCAACCCAACTGGCAACATCTTCCTTTGATAGAACCGTGCGACTATGGAATGCAACAGAACCGAGTTATTGTTTACATGTATATACTGGGCACAGTTCCCATGTGATGTCACTAGATTTCCACCCTAAGAAGACCGACCTTTTCTGCTCTTGTGATGGTAACGGTGAAATTCGCTTCTGGAATATCAGTCAGTATATGTGCACTCGTGTTTCCAAGGGAGGTACAGCACAAGTTCGATTTCAGCCAAGAATTGGACATCTGCTTGCGGCTGCAGCAGATAATGTGGTGTCCATCTTTGATGTTGAGACTGACAGGCAGACACACTCATTACAGGGGCATACCAAAGAGGTACACTCTGTTTGCTGGGACGCGAATGGAGATTATTTAGCATCTGTTAGTCAGGACTCTGTGAGGGTGTGGTCGTTAGCTTCAGGCGATTGCATTCATGAGCTCAGCTCCAATGGGAACAAGTTCCATTCTTGCGTTTTTCATCCAAGTTATTCCACCCTCTTGGTGATTGGGGGATACCAGTCATTGGAGCTGTGGAACATGGCCGAGAATAAGAGCATGACAGTTCCAGCACACGAGGGTCTGATTGCAGCTCTGGCGCAGTCACCTGTAACTGGGATGGTTGCCTCTGCGAGCCATGACAAATCTGTGAAGTTATGGAAATAA 2418 0.4611 MAQSNWEADKMLDVYIYDYLLKRNLHASAKAFMTEGKVAADPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAAAYIEAQQIKAREHQQQLQMQQLLQQRHVQLQRRDANHPSLSGPINAMNSEGMLGQSQASVLAAKIYEERLKHPHSMDSETPPQLIEAGRMALLKSASNHPGQLVQGNPGSVSAALQQIQARTQQTTDIKSEVNLGVTQRSLPMDPSSIYGQGIMQAKSGLGSAGLNQGVSGLPLKGWPLTGIDQLRPSLGAQVQKPFLQTTPTQFQLLTPQQQQQVLAQAQAQGNLGSSPNYGDMDPRRFRVLPRGNMNAKDGQTTGNDGSIGSPMQSSSPKVRVPPQDQAEYLMKMKMNHMQQPSSQQQPDQLQQQQQQQLQQNNRKRKQPSSSGAANSTGTGNTVGPSPNSPPSTPSTHTPGDGVAMAGSLQHVNSMQKSLMMYGPDGTGGLASSSNQLEDMEHFGDVGSLDDNVESFLSHDDGDGRDLFGTLKRSPTEHNTESSKGFTFNEVGCIRTSSSKVVCCHFSSDGKLLASAGHEKKAVLWNMDTLQTESTPEEHALIITDVRFRPNSTQLATSSFDRTVRLWNATEPSYCLHVYTGHSSHVMSLDFHPKKTDLFCSCDGNGEIRFWNISQYMCTRVSKGGTAQVRFQPRIGHLLAAAADNVVSIFDVETDRQTHSLQGHTKEVHSVCWDANGDYLASVSQDSVRVWSLASGDCIHELSSNGNKFHSCVFHPSYSTLLVIGGYQSLELWNMAENKSMTVPAHEGLIAALAQSPVTGMVASASHDKSVKLWK* 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00504 805 Coils Coil 81 101 - -
Eupl07g00504 805 MobiDBLite consensus disorder prediction 367 435 - -
Eupl07g00504 805 ProSiteProfiles Trp-Asp (WD) repeats profile. 691 731 IPR001680 GO:0005515
Eupl07g00504 805 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 566 598 - -
Eupl07g00504 805 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Eupl07g00504 805 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 773 805 - -
Eupl07g00504 805 Gene3D - 485 649 IPR015943 GO:0005515
Eupl07g00504 805 Pfam LisH 10 36 IPR006594 GO:0005515
Eupl07g00504 805 Pfam WD domain, G-beta repeat 772 805 IPR001680 GO:0005515
Eupl07g00504 805 Pfam WD domain, G-beta repeat 565 598 IPR001680 GO:0005515
Eupl07g00504 805 Pfam WD domain, G-beta repeat 687 722 IPR001680 GO:0005515
Eupl07g00504 805 Pfam WD domain, G-beta repeat 605 642 IPR001680 GO:0005515
Eupl07g00504 805 Pfam WD domain, G-beta repeat 527 556 IPR001680 GO:0005515
Eupl07g00504 805 ProSiteProfiles Trp-Asp (WD) repeats profile. 566 598 IPR001680 GO:0005515
Eupl07g00504 805 MobiDBLite consensus disorder prediction 292 352 - -
Eupl07g00504 805 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 609 644 - -
Eupl07g00504 805 ProSiteProfiles Trp-Asp (WD) repeats profile. 524 565 IPR001680 GO:0005515
Eupl07g00504 805 Gene3D - 650 805 IPR015943 GO:0005515
Eupl07g00504 805 MobiDBLite consensus disorder prediction 325 351 - -
Eupl07g00504 805 MobiDBLite consensus disorder prediction 292 306 - -
Eupl07g00504 805 SMART WD40_4 517 556 IPR001680 GO:0005515
Eupl07g00504 805 SMART WD40_4 602 642 IPR001680 GO:0005515
Eupl07g00504 805 SMART WD40_4 684 722 IPR001680 GO:0005515
Eupl07g00504 805 SMART WD40_4 766 805 IPR001680 GO:0005515
Eupl07g00504 805 SMART WD40_4 645 681 IPR001680 GO:0005515
Eupl07g00504 805 SMART WD40_4 725 764 IPR001680 GO:0005515
Eupl07g00504 805 SMART WD40_4 559 598 IPR001680 GO:0005515
Eupl07g00504 805 MobiDBLite consensus disorder prediction 367 416 - -
Eupl07g00504 805 ProSiteProfiles Trp-Asp (WD) repeats profile. 773 805 IPR001680 GO:0005515
Eupl07g00504 805 ProSiteProfiles Trp-Asp (WD) repeats profile. 609 651 IPR001680 GO:0005515
Eupl07g00504 805 CDD WD40 520 805 - -
Eupl07g00504 805 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 805 IPR044716 GO:0003714
Eupl07g00504 805 SUPERFAMILY WD40 repeat-like 518 805 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g00504 Eupl-Chr7 12954490 12983952 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00504 542 765 U-box Gene Family AT2G33340 29.289 2.98e-18 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Eupl07g00504 WD40 0.076 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g00504 - - tss:122655025 1352.42