Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00503 ATGGACAAACAGAAATCACCGAATGATTCTTTTCTAGCTCCCATTAATGTTCTAATGGAAGATCAAGCCCTAGATTCTGGCGATGAAGTTGAAGAAATTAACGAAGCGTTTCTCTGTTGCGTCTGCCTGGATCTCCTCTATAAGCCGGTTGTTCTTGCGTGTGGCCACCTTTCTTGTTTCTGGTGTGTCCATAAAGCCATGAGTGGTTTGCACGAGTCTTACTGTCCTATATGCAGGTGCCCATATAATCATTTTCCCACTATTTGTCGATTGCTCCATTGCTTGCTCCTGAAGATGTACCCTGTAGCCTATAAGAGAAGGGAAGAGGAAGTGCTAGAAGAAGAAAAGAAATTTGGTTGCTTCTCACCTCAGTTTGGTGATCATTTAACCAGCTCACATACTGGTAATGAATTGAATCTCCTGGGTTGCCCTCCCACTTCCACCACCATGTGTTCTCAGTCCGACTCATATTCGACCACTTGTTCCACTTGGAAAAATAACCCTTCTACCACTTATGAGCAGCGAAATTGCAATGCGTCAGTTCATGACAATACAACAACTATTCCTGAAAAAACTGATACAGGGATTTTTGAAGCAACTGGAAATGTAGCTGTTGAAGAGAATAATTTTTCAGAAAATGATCTGAAGGATGGAGCTTGGAAGTTGATTTCCATCAGCGATGTAGCTGGTTTCCAGCAGCAAAATTGCAATGCGACAGTTCATGACAATACAGCAGCTATTCCTGAAAAAACTGATGCAGGGATTTTTGAAGCAACTAGAAATGTAGCTGTTGAAGAGAATAATTTTTCAGAAAATGATCTGAAGGATGGAGCTTGGAAGCTGGTTTCCATTAGCGATGTACTGTGTGCTGCATGCAAGCAACTTCTCTATCGACCTGCTGTGCTTAATTGTGGCCATGTATATTGTGAATCTTGTATAGCTACGTCAATGGGTGAAACACTTAGATGTCAAGTTTGCCAAAGTCAGCATCCAAAAGGGTTTCCAAAAGTCTGTTTGGAGCTTGATCATTTCTTGGAGGAACGATTCTCCAAAGAGTATACGCTGAGAAGAGAGGCAGTTAAGCTCAAACCAGTCTATGGTCAAGCAGGGAGTCCATCAGCCTGTATGTTTCCATTTTGTAATATGCTTCTTTTGGAATGA 1161 0.4177 MDKQKSPNDSFLAPINVLMEDQALDSGDEVEEINEAFLCCVCLDLLYKPVVLACGHLSCFWCVHKAMSGLHESYCPICRCPYNHFPTICRLLHCLLLKMYPVAYKRREEEVLEEEKKFGCFSPQFGDHLTSSHTGNELNLLGCPPTSTTMCSQSDSYSTTCSTWKNNPSTTYEQRNCNASVHDNTTTIPEKTDTGIFEATGNVAVEENNFSENDLKDGAWKLISISDVAGFQQQNCNATVHDNTAAIPEKTDAGIFEATRNVAVEENNFSENDLKDGAWKLVSISDVLCAACKQLLYRPAVLNCGHVYCESCIATSMGETLRCQVCQSQHPKGFPKVCLELDHFLEERFSKEYTLRREAVKLKPVYGQAGSPSACMFPFCNMLLLE* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00503 386 Pfam Zinc finger, C3HC4 type (RING finger) 289 326 - -
Eupl07g00503 386 ProSitePatterns Zinc finger RING-type signature. 304 313 IPR017907 -
Eupl07g00503 386 SMART ring_2 289 326 IPR001841 -
Eupl07g00503 386 SMART ring_2 39 78 IPR001841 -
Eupl07g00503 386 FunFam E3 ubiquitin-protein ligase PRT1 30 125 - -
Eupl07g00503 386 FunFam E3 ubiquitin-protein ligase PRT1 276 370 - -
Eupl07g00503 386 SUPERFAMILY RING/U-box 25 85 - -
Eupl07g00503 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 105 IPR013083 -
Eupl07g00503 386 ProSiteProfiles Zinc finger RING-type profile. 289 327 IPR001841 -
Eupl07g00503 386 ProSiteProfiles Zinc finger RING-type profile. 39 79 IPR001841 -
Eupl07g00503 386 PANTHER UNCHARACTERIZED 25 363 - -
Eupl07g00503 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 376 IPR013083 -
Eupl07g00503 386 SUPERFAMILY RING/U-box 283 330 - -
Eupl07g00503 386 Pfam Zinc finger, C3HC4 type (RING finger) 37 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g00503 Eupl-Chr7 12829627 12854372 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00503 2 79 C3H Transcription Factor Family AT4G27470 29.545 2.50e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g00503 - - rvl:131320392 296.975