Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00496 ATGGCGCAGAGTAACTGGGAAGCAGATAAGATGCTTGATGTTTATATTTATGATTATTTGTTGAAAAGAAATTTGCATGCTTCGGCGAAGGCCTTCATGACAGAAGGGAAGGTTGCTGCAGATCCAGTGGCGATCGATGCTCCCGGAGGGTTTCTCTTTGAATGGTGGTCTGTCTTTTGGGACATCTTCATTGCAAGGACAAACGAGAAACATTCTGAGGTTGCTGCAGCCTATATAGAGGCGCAGCAAATCAAGGCGAGGGAGCACCAGCAACAGCTGCAAATGCAGCAATTGCTGCAGCAACGCCATGTTCAATTGCAACGTAGGGATGCTAATCATCCTACCCTCAGTGGTCCAATAAATGCGATGAACTCTGAAGGAATGCTGGGGCAGTCTCAAGCCAGTGTATTGGCAGCAAAAATTTATGAAGAACGCTTGAAACACCCTCACTCAATGGATTCAGAGACTCCCCCACAACTTATCGAGGCTGGCAGAATGGCCCTTTTGAAATCAGCATCCAATCATCCGGGTCAGTTGGTCCAAGGTAATCCGGGAAGTGTGTCTGCAGCGTTGCAGCAAATTCAGGCACGAACTCAACAGACCACTGACATCAAGAGCGAAGTTAACTTAGGTGTAACTCAAAGATCTTTGCCTATGGATCCTTCATCAATATATGGACAGGGGATTATGCAGGCAAAATCTGGACTAGGCAGTGCAGGATTGAACCAAGGTGTGAGTGGTCTTCCATTGAAGGGTTGGCCTTTAACTGGCATTGATCAACTACGCCCAAGTTTAGGTGCACAAGTACAGAAGCCTTTTCTACAGACCACCCCAACTCAGTTTCAACTTTTGACTCCGCAACAACAACAGCAGGTCTTAGCGCAGGCTCAGGCACAAGGCAACCTTGGTAGTTCACCCAACTATGGAGATATGGATCCACGGAGATTTAGGGTATTACCTAGGGGAAACATGAATGCAAAAGATGGTCAACCTACAGGAAATGATGGATCTATAGGTTCTCCAATGCAATCAAGTTCACCGAAGGTTAGAGTGCCTCCTCAAGATCAAGCAGAATATCTAATGAAGATGAAGATGAACCATATGCAACAGCCTTCCTCTCAGCAACAACCGGACCAGCTGCAGCAGCAGCAGCAACTGCAACAGAATAACAGAAAAAGGAAACAACCTTCTTCTTCTGGAGCTGCTAACAGTACTGGTACGGGAAATACAGTGGGGCCTTCACCGAACTCCCCACCATCAACTCCATCGACTCATACACCTGGTGATGGGGTGGCTATGGCGGGTAGTTTGCAGCATGTTAACAGTATGCAGAAAAGTTTAATGATGTATGGTCCAGATGGAACAGGTGGTCTTGCATCATCTTCAAATCAGCTGGAAGACATGGAACATTTTGGAGACGTTGGTTCCTTGGATGATAACGTGGAATCTTTCCTCTCTCATGATGATGGTGATGGAAGGGATTTGTTTGGCACATTGAAACGTAGTCCCACTGAGCATAATACAGAGTCTTCGAAGGGTTTCACATTCAATGAAGTTGGTTGTATACGCACAAGCAGTAGCAAAGTTGTCTGCTGTCATTTCTCATCAGATGGAAAGCTGTTGGCTAGTGCTGGGCATGAGAAGAAGGCTGTTCTTTGGAATATGGACACACTGCAAACAGAGAGTACTCCAGAAGAACACGCTCTTATAATTACAGATGTTCGTTTTAGACCAAATTCAACCCAACTGGCAACATCTTCCTTTGATAGAACCGTGCGACTATGGAATGCAACAGAACCGAGTTATTGTTTACATGTATATACTGGGCACAGTTCCCATGTGATGTCACTAGATTTCCACCCTAAGAAGACCGACCTTTTCTGCTCTTGTGATGGTAACGGTGAAATTCGCTTCTGGAATATCAGTCAGTATATGTGCACTCGTGTTTCCAAGGGAGGTACAGCACAAGTTCGATTTCAGCCAAGAATTGGACATCTGCTTGCGGCTGCAGCAGATAATGTGGTGTCCATCTTTGATGTTGAGACTGACAGGCAGACACACTCATTACAGGGGCATACCAAAGAGGTACACTCTGTTTGCTGGGACGCGAATGGAGATTATTTGGCATCTGTTAGTCAGGACTCTGTGAGGGTGTGGTCGTTAGCTTCAGGCGATTGCATTCATGAGCTCAGCTCCAATGGGAACAAGTTCCATTCTTGCGTTTTTCATCCAAGTTATTCCACCCTCTTGGTGATTGGGGGATACCAGTCATTGGAGCTGTGGAACATGGCCGAGAATAAGAGCATGACAGTTCCAGCACACGAGGGTCTGATTGCAGCTCTGGCGCAGTCACCTGTAACTGGGATGGTTGCCTCTGCGAGCCATGACAAATCTGTGAAGTTATGGAAATAA 2412 0.4623 MAQSNWEADKMLDVYIYDYLLKRNLHASAKAFMTEGKVAADPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAAAYIEAQQIKAREHQQQLQMQQLLQQRHVQLQRRDANHPTLSGPINAMNSEGMLGQSQASVLAAKIYEERLKHPHSMDSETPPQLIEAGRMALLKSASNHPGQLVQGNPGSVSAALQQIQARTQQTTDIKSEVNLGVTQRSLPMDPSSIYGQGIMQAKSGLGSAGLNQGVSGLPLKGWPLTGIDQLRPSLGAQVQKPFLQTTPTQFQLLTPQQQQQVLAQAQAQGNLGSSPNYGDMDPRRFRVLPRGNMNAKDGQPTGNDGSIGSPMQSSSPKVRVPPQDQAEYLMKMKMNHMQQPSSQQQPDQLQQQQQLQQNNRKRKQPSSSGAANSTGTGNTVGPSPNSPPSTPSTHTPGDGVAMAGSLQHVNSMQKSLMMYGPDGTGGLASSSNQLEDMEHFGDVGSLDDNVESFLSHDDGDGRDLFGTLKRSPTEHNTESSKGFTFNEVGCIRTSSSKVVCCHFSSDGKLLASAGHEKKAVLWNMDTLQTESTPEEHALIITDVRFRPNSTQLATSSFDRTVRLWNATEPSYCLHVYTGHSSHVMSLDFHPKKTDLFCSCDGNGEIRFWNISQYMCTRVSKGGTAQVRFQPRIGHLLAAAADNVVSIFDVETDRQTHSLQGHTKEVHSVCWDANGDYLASVSQDSVRVWSLASGDCIHELSSNGNKFHSCVFHPSYSTLLVIGGYQSLELWNMAENKSMTVPAHEGLIAALAQSPVTGMVASASHDKSVKLWK* 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00496 803 Coils Coil 81 101 - -
Eupl07g00496 803 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Eupl07g00496 803 ProSiteProfiles Trp-Asp (WD) repeats profile. 607 649 IPR001680 GO:0005515
Eupl07g00496 803 Pfam LisH 10 36 IPR006594 GO:0005515
Eupl07g00496 803 Gene3D - 652 803 IPR015943 GO:0005515
Eupl07g00496 803 Gene3D - 478 651 IPR015943 GO:0005515
Eupl07g00496 803 MobiDBLite consensus disorder prediction 292 352 - -
Eupl07g00496 803 CDD WD40 518 803 - -
Eupl07g00496 803 ProSiteProfiles Trp-Asp (WD) repeats profile. 771 803 IPR001680 GO:0005515
Eupl07g00496 803 ProSiteProfiles Trp-Asp (WD) repeats profile. 522 563 IPR001680 GO:0005515
Eupl07g00496 803 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 607 642 - -
Eupl07g00496 803 SMART WD40_4 682 720 IPR001680 GO:0005515
Eupl07g00496 803 SMART WD40_4 764 803 IPR001680 GO:0005515
Eupl07g00496 803 SMART WD40_4 600 640 IPR001680 GO:0005515
Eupl07g00496 803 SMART WD40_4 515 554 IPR001680 GO:0005515
Eupl07g00496 803 SMART WD40_4 643 679 IPR001680 GO:0005515
Eupl07g00496 803 SMART WD40_4 723 762 IPR001680 GO:0005515
Eupl07g00496 803 SMART WD40_4 557 596 IPR001680 GO:0005515
Eupl07g00496 803 ProSiteProfiles Trp-Asp (WD) repeats profile. 564 596 IPR001680 GO:0005515
Eupl07g00496 803 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 564 596 - -
Eupl07g00496 803 MobiDBLite consensus disorder prediction 292 306 - -
Eupl07g00496 803 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 771 803 - -
Eupl07g00496 803 MobiDBLite consensus disorder prediction 367 414 - -
Eupl07g00496 803 Pfam WD domain, G-beta repeat 603 640 IPR001680 GO:0005515
Eupl07g00496 803 Pfam WD domain, G-beta repeat 770 803 IPR001680 GO:0005515
Eupl07g00496 803 Pfam WD domain, G-beta repeat 685 720 IPR001680 GO:0005515
Eupl07g00496 803 Pfam WD domain, G-beta repeat 525 554 IPR001680 GO:0005515
Eupl07g00496 803 Pfam WD domain, G-beta repeat 563 596 IPR001680 GO:0005515
Eupl07g00496 803 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 803 IPR044716 GO:0003714
Eupl07g00496 803 ProSiteProfiles Trp-Asp (WD) repeats profile. 689 729 IPR001680 GO:0005515
Eupl07g00496 803 SUPERFAMILY WD40 repeat-like 516 803 IPR036322 GO:0005515
Eupl07g00496 803 MobiDBLite consensus disorder prediction 327 351 - -
Eupl07g00496 803 MobiDBLite consensus disorder prediction 367 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g00496 Eupl-Chr7 12710901 12740338 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00496 540 763 U-box Gene Family AT2G33340 29.289 3.10e-18 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Eupl07g00496 WD40 0.076 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g00496 - - tss:122655025 1355.12