Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00495 ATGGACAAACAGAAATCACCGAATGATTCTTTTCTAGCTCCCATTAATGTTCTAATGGAAGATCAAGCCCTAGATTCTGGCGATGAAGTTGAAGAAATTAACGAAGCGTTTCTCTGTTGCGTCTGCCTGGATCTCCTCTATAAGCCGGTTGTTCTTGCGTGTGGCCACCTTTCTTGTTTCTGGTGTGTCCATAAAGCCATGAGTGGTTTGCACGAGTCTTACTGTCCTATATGCAGGTGCCCATATAATCATTTTCCCACTATTTGTCGATTGCTCCATTGCTTGCTCCTGAAGATGTACCCTGTAGCCTATAAGAGAAGGGAAGAGGAAGTGCTAGAAGAAGAAAAGAAATTTGGTTGCTTCTCACCTCAGTTTGGTGATCATTTAACCAGCTCACATACTGGTAATGAATTGAATCTCCTGGGTTGCCCTCCCACTTCCACCACCATGTGTTCTCAGTCCGACTCATATTCGACCACTTGTTCCACTTGGAAAAATAACCCTTCTACCACTTATGAGCAGCGAAATTGCAATGCGTCAGTTCATGACAATACAACAACTATTCCTGAAAAAACTGATACAGGGATTTTTGAAGCAACTGGAAATGTAGCTGTTGAAGAGAATAATTTTTCAGAAAATGATCTGAAGGATGGAGCTTGGAAGTTGATTTCCATCAGCGATGTAGCTGGTTTCCAGCAGCAAAATTGCAATGCGACAGTTCATGACAATACAGCAGCTATTCCTGAAAAAACTGATGCAGGGATTTTTGAAGCAACTAGAAATGTAGCTGTTGAAGAGAATAATTTTTCAGAAAATGATCTGAAGGATGGAGCTTGGAAGCTGGTTTCCATTAGCGATGTACTGTGTGCTGCATGCAAGCAACTTCTCTATCGACCTGCTGTGCTTAATTGTGGCCATGTATATTGTGAATCTTGTATAGCTACGTCAATGGGTGAAACACTTAGATGTCAAGTTTGCCAAAGTCAGCATCCAAAAGGGTTTCCAAAAGTCTGTTTGGAGCTTGATCATTTCTTGGAGGAACGATTCTCCAAAGAGTATACGCTGAGAAGAGAGGCAGTTAAGCTCAAACCAGTCTATGGTCAAGCAGGGAGTCCATCAGCCTGTGCGACAGAAGCTGGGAAACACGGTGTCCAGTCATCGCCGTCTCCTACAAAAAATTACTTTTCATGGTTGAGTGACCGCTGGACAAAGGTTCACATTTTAGCTGGTTGTGATTATTGTGGGATGTATCCAATAATCGGGGAGAGGTACAGATGTAAAGATTGTGTGGAGGCAATCGGCTTCGACCTATGTGGACAGTGTTATAATACTCCCTCCAAGCTTCCGGGCCGATTCAATCAGCAGCACACGCCAGAGCATAAGTTTGAGCTCATTCGATCAAACCCGATACGTAATACAATGTTGAAACTTTTGCCTGACCATTCAGAAGATGGTCCTGCTGGTCCCGTTCTCTCTGATGATGCTTTAGAGGATCCAGAAGATGATTTTTCTGCTCATATGCAATCTGATGATGCTCCAGAGGATCCAGAAGGCACCCATTCCACCATCTAA 1572 0.4332 MDKQKSPNDSFLAPINVLMEDQALDSGDEVEEINEAFLCCVCLDLLYKPVVLACGHLSCFWCVHKAMSGLHESYCPICRCPYNHFPTICRLLHCLLLKMYPVAYKRREEEVLEEEKKFGCFSPQFGDHLTSSHTGNELNLLGCPPTSTTMCSQSDSYSTTCSTWKNNPSTTYEQRNCNASVHDNTTTIPEKTDTGIFEATGNVAVEENNFSENDLKDGAWKLISISDVAGFQQQNCNATVHDNTAAIPEKTDAGIFEATRNVAVEENNFSENDLKDGAWKLVSISDVLCAACKQLLYRPAVLNCGHVYCESCIATSMGETLRCQVCQSQHPKGFPKVCLELDHFLEERFSKEYTLRREAVKLKPVYGQAGSPSACATEAGKHGVQSSPSPTKNYFSWLSDRWTKVHILAGCDYCGMYPIIGERYRCKDCVEAIGFDLCGQCYNTPSKLPGRFNQQHTPEHKFELIRSNPIRNTMLKLLPDHSEDGPAGPVLSDDALEDPEDDFSAHMQSDDAPEDPEGTHSTI* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00495 523 ProSitePatterns Zinc finger RING-type signature. 304 313 IPR017907 -
Eupl07g00495 523 Gene3D - 400 465 IPR043145 -
Eupl07g00495 523 SMART ring_2 289 326 IPR001841 -
Eupl07g00495 523 SMART ring_2 39 78 IPR001841 -
Eupl07g00495 523 FunFam E3 ubiquitin-protein ligase PRT1 30 125 - -
Eupl07g00495 523 CDD ZZ_PCMF_like 409 465 - -
Eupl07g00495 523 PANTHER UNCHARACTERIZED 25 468 - -
Eupl07g00495 523 SUPERFAMILY RING/U-box 25 85 - -
Eupl07g00495 523 SUPERFAMILY RING/U-box 283 330 - -
Eupl07g00495 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 383 IPR013083 -
Eupl07g00495 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 105 IPR013083 -
Eupl07g00495 523 Pfam Zinc finger, C3HC4 type (RING finger) 37 83 - -
Eupl07g00495 523 Pfam Zinc finger, C3HC4 type (RING finger) 289 326 - -
Eupl07g00495 523 ProSiteProfiles Zinc finger RING-type profile. 39 79 IPR001841 -
Eupl07g00495 523 ProSiteProfiles Zinc finger RING-type profile. 289 327 IPR001841 -
Eupl07g00495 523 MobiDBLite consensus disorder prediction 477 523 - -
Eupl07g00495 523 FunFam E3 ubiquitin-protein ligase PRT1 400 465 - -
Eupl07g00495 523 FunFam E3 ubiquitin-protein ligase PRT1 276 370 - -
Eupl07g00495 523 Pfam Zinc finger, ZZ type 410 447 IPR000433 GO:0008270
Eupl07g00495 523 SUPERFAMILY RING/U-box 400 465 - -
Eupl07g00495 523 ProSiteProfiles Zinc finger ZZ-type profile. 406 470 IPR000433 GO:0008270
Eupl07g00495 523 MobiDBLite consensus disorder prediction 501 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g00495 Eupl-Chr7 12570949 12641797 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00495 2 79 C3H Transcription Factor Family AT4G27470 30.682 4.59e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g00495 - - msin:131245810 502.286