Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00480 ATGGAGAAAGAAGAAGAGAACTACTCATCGGCAGGTCTGCCGGGGAGTTATACAGGGCTAGACTACTCTATAGATCATCATCAACTCATGAAGCCACGGTTCGGAGAAAATTCCGGTGATAATAACGCTGGGATGGTGGACTATATGTTCAATAATCCTCCACCCCAACAAATATCTTCTGGTTTTTGTAGTTCCACTTCTCTTGATAGATTGAGTTTCGCCGAAGTGATGCAGTTTGCCGATTTTGGACCCAAATTGGCCTTAAACCAGGCCAAGATCTCCGACGAAGAAAATACGATCGACCCGGTTTACTTCCTTAAGTTTCCAGTATTAAGTGATAAGTTGCAGGATCAGACTCTCATTGCTCCTTCAACAATTGGAAACGATGAGGAGAAATTTAAAGGACTGAGTATAGAAAGTAATACGATGGTCATCGAAGATGAAGCTGATCAAGGAGAGGAAGAAGAAGCTCGGGTATCTGAGAATACCTCGGTTCGGCTTCGTTTTCTTGGAGGGAGTCTTATTCAGAAGAACCCTACTTCCGAAGCGAAGAACCGACGAAAGAGGCCGAGGTCGGTGAAGACGAGTGAAGAGGTCGAGAGCCAACGGATGACTCACATTGCAGTCGAACGCAATAGAAGGAAGCAGATGAACGAGCATCTCCGAGTGCTAAGGTCTCTCATGCCGGGCTCATACGTACAAAGGGGAGATCAAGCATCGATTATTGGTGGAGCTATCGAGTTTGTAAGAGAATTGGAGCAGCTCCTTCAATGTTTAGAATCTCAAAAGCGTCGAAGACTCTTCGGTGGCAATGAAACTCCAAGACCTATAGGGGATTCACCTTCTCTAACAATGCAACAGCCTGCTCAACCACCATTCTTCCCCCCCTTACCTCTTCCCAACGATCAAATCAAGCTTGTTGGGTTCGAATCGGGACTCCAAGAGGAAACAGCGGAGAATAAGTCGTGCTTAGCCGATGTCGAAGTCAAGCTCTTAGGCTTCGATGCCATGATCAAGATCCTCTCTCGTCGAAGGCCTGGACAGCTACTCAAGACAATAGCAGCCCTCGAAGATTTGCAACTTAACATTCTCCACACCAACATCACCACTGTTGAACAAACTGTTCTCTATTCCTTTAATGTCAAGGTCGCAAGCGAATCGGGATTTACAGCCGAAGATATCGCGAATTCGGTTCAACAGATATTCAATTTCATCCATGCAAGCAGCACCATATAA 1236 0.4579 MEKEEENYSSAGLPGSYTGLDYSIDHHQLMKPRFGENSGDNNAGMVDYMFNNPPPQQISSGFCSSTSLDRLSFAEVMQFADFGPKLALNQAKISDEENTIDPVYFLKFPVLSDKLQDQTLIAPSTIGNDEEKFKGLSIESNTMVIEDEADQGEEEEARVSENTSVRLRFLGGSLIQKNPTSEAKNRRKRPRSVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLFGGNETPRPIGDSPSLTMQQPAQPPFFPPLPLPNDQIKLVGFESGLQEETAENKSCLADVEVKLLGFDAMIKILSRRRPGQLLKTIAALEDLQLNILHTNITTVEQTVLYSFNVKVASESGFTAEDIANSVQQIFNFIHASSTI* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00480 411 CDD bHLH_AtFAMA_like 204 276 - -
Eupl07g00480 411 Gene3D - 193 266 IPR036638 GO:0046983
Eupl07g00480 411 PANTHER TRANSCRIPTION FACTOR FAMA 44 402 IPR044283 GO:0003700|GO:0010052
Eupl07g00480 411 MobiDBLite consensus disorder prediction 181 204 - -
Eupl07g00480 411 MobiDBLite consensus disorder prediction 178 204 - -
Eupl07g00480 411 FunFam Basic helix-loop-helix transcription factor 192 267 - -
Eupl07g00480 411 CDD ACT_UUR-ACR-like 337 401 - -
Eupl07g00480 411 Pfam Helix-loop-helix DNA-binding domain 202 253 IPR011598 GO:0046983
Eupl07g00480 411 SMART finulus 207 258 IPR011598 GO:0046983
Eupl07g00480 411 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 201 271 IPR036638 GO:0046983
Eupl07g00480 411 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 201 252 IPR011598 GO:0046983
Eupl07g00480 411 ProSiteProfiles ACT domain profile. 337 411 IPR002912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g00480 Eupl-Chr7 12151043 12153290 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00480 32 411 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 60.099 3.24e-144 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl07g00480 HLH 8.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g00480 K26213 - nnu:104589386 578.17