Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00453 ATGGTGCAACGGGGCAGAAGGAGTGAAGAGGAAGGTGGTGGTGGTGCTGGGAAAGAGTTGGCATTGGTCTCACCTTCTTCTTCTTCTGCTGCTGCTTGCTATGAGAGCCCGTTGCCGGTGAGAGAGGCGCCACCACCTCAGAACTACTATCCTTACCCCCCACCTCTTGCAAAATATGAAGATATCGCTGCCGATTCCAAGCTCTTCATGGATACTCTGGAGAAACTCCACACTACTCTGGGTACCAAGTTCATGATCCCAACTATTGGGGGGAAGGAATTAGACTTACATCGGCTCTTTATGGAGGTTACTTCTCGAGGTGGTATTGAAAAGGTCATTAGAGAGAGAAGATGGAAAGAAGTAACTGCTGTTTTCAGTTTTCCCTCTACGGCGACAAATGCCTCTTTTGTCCTGCGCAAGTACTATGTTTCCTTGATTCATCACTACGAGCAAATCTATTTCTTTGGAGCCCAGGGTTGGACCCCTCCCTCAGCAGATCCATTGCAGAGTCCTTCTCCGACACGAGTTCCAGCTCAACGATTAGCTGAACCAGTGGTTCCATCCTCAGAAGTTCAAGCAGCTGCTGCCCACAAGCGGAGGAAAAGTACTGGGGAGTTCGTATCTGGAGCAAGTTCATCTTCGTTGCGTTGTCCTGTGGTTGGAGTCATTGATGGGAAATTTGAACATGGTTATCTGGTCACTGTTACAGTTGGCACAGAGAAGCTACAAGGTGTCCTGTATCACATTCCTGAACACCCAACTGGTCAAGTGCCACAGTATTCTGGCATTATTGCCCACAACAGTGCCAATGACACTGGGGCATCAGGTGTGCGCCGTCGCCGGCGTCGGAAGAAATCTGAGATGAGAAAGAGAGACCCTGCCCATCCAAAACCTAACAGAAGTGGGTACAATTTCTTCTTCGCAGAGCAGCATGCTAGATTGAAACCACTTCATCCAGGGAAGGATAGGGAGATCAGTAAGATGATTGGTGATCTATGGAACAAACTAACAGAGTCCGAGAAAGCTGTTTACCAGGAGAGAGGCTTAAAGGATAAAGAGAGGTACAGAAGTGAGATGGAGGAGTACAGGGAGAGATTAAGGACAGGTCAAATTATCAGTAATGCTGTGCCAATCCAGCAGCGGCTTGCAGTGCCAGAGGTAGCGATGGTGGAATCAGATCCGAAAATGGACGCTGAAGGTGACTCCCAGACTCTAGAAAATGATAGTAGTTCTGGCGGTAGTGATTCCGAGGATAAAACTCCAGAAAAGAATTTGGAAATGGAGATGTCTGCGGGAGCAGGCGATGGTATAGAATCTGGCAATGTAGGCGTGGATCTGTCAACCGAGGGAGATGGTTTTGAATTGCAGAAGAGGGATCAGAAGGTTAGAGATGAGAGTGATGCTCAAGGTTCAAGCTCGGGCAATGTGTCAGAGTCATTGAAGAAAGAGTCAGTAACTAACACCGAGTTGTAG 1473 0.4813 MVQRGRRSEEEGGGGAGKELALVSPSSSSAAACYESPLPVREAPPPQNYYPYPPPLAKYEDIAADSKLFMDTLEKLHTTLGTKFMIPTIGGKELDLHRLFMEVTSRGGIEKVIRERRWKEVTAVFSFPSTATNASFVLRKYYVSLIHHYEQIYFFGAQGWTPPSADPLQSPSPTRVPAQRLAEPVVPSSEVQAAAAHKRRKSTGEFVSGASSSSLRCPVVGVIDGKFEHGYLVTVTVGTEKLQGVLYHIPEHPTGQVPQYSGIIAHNSANDTGASGVRRRRRRKKSEMRKRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKDREISKMIGDLWNKLTESEKAVYQERGLKDKERYRSEMEEYRERLRTGQIISNAVPIQQRLAVPEVAMVESDPKMDAEGDSQTLENDSSSGGSDSEDKTPEKNLEMEMSAGAGDGIESGNVGVDLSTEGDGFELQKRDQKVRDESDAQGSSSGNVSESLKKESVTNTEL* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00453 490 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 29 408 - -
Eupl07g00453 490 SMART ARID_2 60 150 - -
Eupl07g00453 490 SUPERFAMILY ARID-like 61 164 IPR036431 GO:0003677
Eupl07g00453 490 MobiDBLite consensus disorder prediction 266 302 - -
Eupl07g00453 490 Pfam HMG (high mobility group) box 296 363 IPR009071 -
Eupl07g00453 490 FunFam High mobility group B protein 15 57 170 - -
Eupl07g00453 490 ProSiteProfiles ARID domain profile. 63 154 IPR001606 GO:0003677
Eupl07g00453 490 MobiDBLite consensus disorder prediction 394 490 - -
Eupl07g00453 490 MobiDBLite consensus disorder prediction 467 490 - -
Eupl07g00453 490 SMART bright_3 64 155 IPR001606 GO:0003677
Eupl07g00453 490 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Eupl07g00453 490 MobiDBLite consensus disorder prediction 451 466 - -
Eupl07g00453 490 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 296 363 IPR009071 -
Eupl07g00453 490 Coils Coil 345 365 - -
Eupl07g00453 490 Gene3D High mobility group box domain 279 373 IPR036910 -
Eupl07g00453 490 CDD ARID_HMGB9-like 65 150 IPR045303 GO:0003677
Eupl07g00453 490 CDD HMG-box_AtHMGB9-like 296 362 - -
Eupl07g00453 490 MobiDBLite consensus disorder prediction 1 23 - -
Eupl07g00453 490 Gene3D - 56 159 IPR036431 GO:0003677
Eupl07g00453 490 SUPERFAMILY HMG-box 288 368 IPR036910 -
Eupl07g00453 490 SMART hmgende2 295 364 IPR009071 -
Eupl07g00453 490 FunFam High mobility group B protein 15 278 373 - -
Eupl07g00453 490 Pfam ARID/BRIGHT DNA binding domain 67 150 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g00453 Eupl-Chr7 11151896 11169531 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00453 55 393 ARID Transcription Factor Family AT1G04880 60.345 6.00e-132 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Eupl07g00453 ARID 2.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g00453 - - ming:122089191 614.379