Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00446 ATGGAAGGTGATCGTCGGAGGCTGACGCTTGCGAACCATATGTCTGTTATTGAGACATCGAACCTTCGAGATCTTCTGAGATTCAGAGACGACGATGATAACGATCGTCGTGACACCTTAGCGGGGCAGACCCTAGGCGCGGTTCTCGGCTTCCAGAAGAATCCTACACCAATCCAGGCAGGCCGAACCCTCCTCGACATCATCAGAGACGAGGAGTCCGGCGCTGCTTACAGAGGCCTCGTCGCCCACAACAACAACAAAAGCTGGAAATCCTTCAAGGACTGCCTCCGTCTCCGCCGTGTCGGCGCCGCCTGGTCATCTTCCTCTCATCCTGTCCCTTCCTGCGACATCTCCGTCGAAAGTTGCAGAATCCAAATTTCTCGTCCTTCCCCGGCCGTTTCACTCAATCGAAGCTCGTTCCAATTGCCGACATCCACCACCATAGCCAACACTGGAGACTCAATTCCCACCACAATTTCTCCCCAAAACGAATCGGACATCCATGAAAACGGAAACATTATTGCAGAATCCGATACAACTTCAGCTGCCGAACCGGTCTCCAATTCCATGCGCCTGTCCGCAGCATTAGAGGCGGAACGAGAGGAACAACAGCGAGCTCCAGAGAACCAAGAAATTGTGTTGGATTCAACTGCTGCTGTAGCAGAGGAAGGAGGAAACGCATCGGCGGAGGCAGCGCCGATTAGAGTATCGTTGATGGCGTTGCTAGCGGAGACAGACAGACAAGCAGGGGTTGTGGGGTCCACATTGATGGGGACAGAGGAGGAAGAGGAGGAAGAAGGGGAAGGAGGTAAGGAAGTAGGGGAATTCGTATGCTGCGTGTGTATGCTAAGACACAAGGGAGCTGCATTCATACCCTGCGGACACACCTTCTGCAGACTTTGCTCTAGGGAGCTTTGGGTTAGTAGAGGAAATTGCCCTCTCTGCAACGGATTCATCTTGGAAATTCTCGATATATTCTAA 981 0.526 MEGDRRRLTLANHMSVIETSNLRDLLRFRDDDDNDRRDTLAGQTLGAVLGFQKNPTPIQAGRTLLDIIRDEESGAAYRGLVAHNNNKSWKSFKDCLRLRRVGAAWSSSSHPVPSCDISVESCRIQISRPSPAVSLNRSSFQLPTSTTIANTGDSIPTTISPQNESDIHENGNIIAESDTTSAAEPVSNSMRLSAALEAEREEQQRAPENQEIVLDSTAAVAEEGGNASAEAAPIRVSLMALLAETDRQAGVVGSTLMGTEEEEEEEGEGGKEVGEFVCCVCMLRHKGAAFIPCGHTFCRLCSRELWVSRGNCPLCNGFILEILDIF* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00446 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 326 IPR013083 -
Eupl07g00446 326 ProSiteProfiles Zinc finger RING-type profile. 278 316 IPR001841 -
Eupl07g00446 326 PANTHER OS01G0917900 PROTEIN 36 326 - -
Eupl07g00446 326 SUPERFAMILY RING/U-box 272 322 - -
Eupl07g00446 326 SMART ring_2 278 315 IPR001841 -
Eupl07g00446 326 MobiDBLite consensus disorder prediction 145 165 - -
Eupl07g00446 326 Pfam Zinc finger, C3HC4 type (RING finger) 277 319 - -
Eupl07g00446 326 CDD RING-HC 276 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g00446 Eupl-Chr7 10912463 10914368 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00446 3 326 C3H Transcription Factor Family AT3G25030 33.631 1.11e-43 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g00446 - - nnu:104586010 243.432