Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00441 ATGGCGAAAACAGGGGTGGTGGAGACCGATCCAGCGATGGTGATGAAGGCGACTGAGCTTAAGAAGGAATTGCAAAGACTCGTGAAAATAATCATCGATGAAGATGATTCTCGGGTTGAGATATTCGATCAGGCTAAAGAAACTTTGTCTGCATTAAAGGATTTGAAGTTAAAGAAATCTCGCTCTTTAAAGCTTGACGCCATCGCTTTTCCTGAACATTTCCGTTGCCCTATTTCCAATGAACTCATGAAAGATCCTGTTCTTTTGGCTACTGGACAGACTTATGATCGATCGTTTATTCAGACTTGGCTAAACGCAGGCAACCGGACATGCCCACGGACCAATCAGGTCCTTTCGCATACGAACCTCACCCCCAATTGCTTGGTACGCGACATGATTTTGCAATGGTGCAAGAACCAGGGGATTGATCTACCAAACCCTGTCCAGGTTAAAGGTGAGGAAGGTATCACCCAACGAGACAAAGACAATTTCGCATCATTGCTTGAGAAGATGTTATCCCCATCAGTTTCCGAACAGAAAGAGGCCGCGAAGAAACTCCGGTCGCTAACCAAGCGGATACCGTCCTTCCGGGCTCTCTTCGGCGAGTCTCCTGATGCAATTCCCCAATTGCTATCTCCTTTGTCACCAGGCAAAGCCAATTGTTACCCTGATCTTCAAGAAGACTTGATCACAACAGTGTTGAACCTCTCAATTCACGACGACAACAAGAAACTTGTTGCAGAGACCCCAGTGACCATTCCTCTGCTTATCGAATCCTTGAAAAGTGGAACCATTGAAACAAGGAGCAATGCAGCAGCAGCCCTCTTCACATTGTCCGCTCTCGATTCGAACAAGGTCATTATAGGGAAATCTGGGGCTCTCAAACCCCTCATTGATCTTCTGGAAGAGGGGCACCAATTAGCCTTGAAGGATGTTTCTTCTGCAATCTTCAACTTATGTATAATGCACGACAACAAGGTAAGGGCTGTTCATGATGGGGCAGTCAAGGTGATCCTGAAGAAGATAATGGACAGTATTCTTGTCGACGAGTTGTTGGCGATCCTCGCGATGTTATCATCCCATCAGAAGGCGGTCGAGGAGATGGGCGAGCTTGGGGCTGTGCCATTTTTGCTGAGCATAATTAGGGAGAGCACATGTGGACGCAAGAAGGAAAACTGCATCGCCATCCTCTACTCGATCTGTTTGAACGATCGGACTAAGTGGAAGGAGATAAGGGATGAGGAGAAAGCCCATGGCACAATCAGTGAACTTGCCATGACTGGGACTTCGAGGGCCAGGAGGAAGGCTAATGGTATCCTCGAGAGACTGAACCGGCACGTTACAATGACGCATACTGCGTGA 1362 0.475 MAKTGVVETDPAMVMKATELKKELQRLVKIIIDEDDSRVEIFDQAKETLSALKDLKLKKSRSLKLDAIAFPEHFRCPISNELMKDPVLLATGQTYDRSFIQTWLNAGNRTCPRTNQVLSHTNLTPNCLVRDMILQWCKNQGIDLPNPVQVKGEEGITQRDKDNFASLLEKMLSPSVSEQKEAAKKLRSLTKRIPSFRALFGESPDAIPQLLSPLSPGKANCYPDLQEDLITTVLNLSIHDDNKKLVAETPVTIPLLIESLKSGTIETRSNAAAALFTLSALDSNKVIIGKSGALKPLIDLLEEGHQLALKDVSSAIFNLCIMHDNKVRAVHDGAVKVILKKIMDSILVDELLAILAMLSSHQKAVEEMGELGAVPFLLSIIRESTCGRKKENCIAILYSICLNDRTKWKEIRDEEKAHGTISELAMTGTSRARRKANGILERLNRHVTMTHTA* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00441 453 Pfam U-box domain 71 140 IPR003613 GO:0004842|GO:0016567
Eupl07g00441 453 Gene3D - 148 449 IPR011989 -
Eupl07g00441 453 SMART Ubox_2 73 136 IPR003613 GO:0004842|GO:0016567
Eupl07g00441 453 ProSiteProfiles U-box domain profile. 69 143 IPR003613 GO:0004842|GO:0016567
Eupl07g00441 453 CDD RING-Ubox_PUB 71 123 IPR045210 -
Eupl07g00441 453 FunFam RING-type E3 ubiquitin transferase 154 449 - -
Eupl07g00441 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 143 IPR013083 -
Eupl07g00441 453 SUPERFAMILY RING/U-box 61 147 - -
Eupl07g00441 453 PANTHER U BOX DOMAIN-CONTAINING 19 443 - -
Eupl07g00441 453 FunFam RING-type E3 ubiquitin transferase 69 143 - -
Eupl07g00441 453 SUPERFAMILY ARM repeat 160 443 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g00441 Eupl-Chr7 10827943 10831257 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00441 132 453 U-box Gene Family AT3G07360 61.656 1.71e-136 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g00441 - - nnu:104587316 665.611