Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00436 ATGGAAAAAGAGAAGTACTTTTTGAATGCTGGTAGCCCACCTCCTGCTTGGCAATCTTCTTCTTCAGGTGGAATGGAGGTTCAACTTGGTGAGCTGAATTGTTCTTCAGAGCAATTGCCCAATTGCTTTCTCAATCTCAATTGGGAGAATTCCATGGATCAGAGTGTTCCCTTTGAATCAGCCTTGAGTTCCATTGTGTCCTCGCCTGTGGCATCGAATACTGCTGTGCCTGCTGAGAGCAATGTCATCAGAGAATTGATTGGGAGATTGGGAAGTATCTGCAACTCTGCTGAGATCTCTCCACAGTCTCAGACAATGGGGGGAAGTGGAGCTTCTTACATGGGGGGAAACAACAGTACCAACACTTCCTGTTACAGCACCCCATTGAATTCCCCTCCTAAGCTCAATCTTTCCATGATGGATCATCAAGTCAGGGGAAACTTACCCATTTTGGGGAATTCAATGCCGACACATCCAAGTTTGGCTCCCTTCTCAGCTGATCCTGGATTTGCTGAGAGAGCTGCTAGGTTCTCCTGCTTCGGTAGTCGGAGTTTCGGAGGACTAACAGGCCAATTCGGGTTCAACGAAACCGAATTGCCTTACCGATCAACCCCAAGAGTGGAAAATGGCAAGCTCCCGAGAGTCTCAAGTAACCAGTCTCTTAAAACTACTGGATCTCAGATGGGTGGTCTAGACAACAAGGATTCTCCTTTGCAAGACGGATTAGAGACCGAGATGAGGTCCGTCTCTGCTTCAGCTTCAGCTTCAGCTTCAGCTTCAGACAGGAAATTCAGTAGACTATCTAGGTCTTCCACTCCTGATAATGCAGAATTTGCCAATGCCCGCGAGGAATCTTCGGCTTCTGAACAGATCCCAGGCGGGGAGGTCGGCTTGAAAGGCCCGAACGACGTCAATGGTCGAAAAAGAAAAGCAGTTCCTAAGGGAAAAGCGAAGGAGCTCCCTGCATCTTCCTCTGCCAAAGATGCCGAGGCAGCAGATGATGACGACTCGAGTGCAAAGAGATGCAAACCTTCCGAAGCCACTGTAAATGAAAAGGATGCTGCAAAGGCAAAGGTGGAACCAAGTGGGAGTACCAACACTGCTGGAGATGGGACTCAGAAAAAAACCAAGGATAACCCAAAGCCTCCTGAACCTCCTAAGGACTACATCCATGTAAGAGCAAGAAGAGGCCAAGCTACAGACAGCCATAGTCTCGCCGAAAGGGTTCGAAGAGAGAAGATCAGTGAACGGATGAAATTCCTTCAAGATCTTGTACCAGGTTGCAATAAGGTAACTGGCAAAGCAGTTATGCTCGATGAAATTATAAACTATGTACAGTCGTTGCAGCGGCAGGTTGAGTTCCTCTCTATGAAGTTAGCCACTGTGAATCCCAGGCTGGATTTCAACATGGAAAGCCTACTCTCGAAGGATATACTTAACTCGCGCGGGTCATTGCCACACGCAATTTACCCACTAGACTCATCGGCATCAGCCTTTCCTTATGGTCACCAGTCTCAGCAAGGACCACCACTACAGAGCGGAATTTCTAATGGGATGGAGACCCAGTGCTCGTTGAACCCTGTAGATGCTGCATCGCGTCGAAATTTAAGCATGCAATTACCTTCCCTTGATGGATTTGCCGAAACTGCTTCTCAGCTTGCAGCATTTTGGGGGGATGATCTCCAAAGCATTGTGCAGATGGGTTTTGGCCAAAATCAGAGTCAGGAAACGGCATTTCAGTCACAGAATTTCCATGGTATGAAAATAAATCTTGGGGAATTGTGGTTCTTTCTTTAA 1797 0.4752 MEKEKYFLNAGSPPPAWQSSSSGGMEVQLGELNCSSEQLPNCFLNLNWENSMDQSVPFESALSSIVSSPVASNTAVPAESNVIRELIGRLGSICNSAEISPQSQTMGGSGASYMGGNNSTNTSCYSTPLNSPPKLNLSMMDHQVRGNLPILGNSMPTHPSLAPFSADPGFAERAARFSCFGSRSFGGLTGQFGFNETELPYRSTPRVENGKLPRVSSNQSLKTTGSQMGGLDNKDSPLQDGLETEMRSVSASASASASASDRKFSRLSRSSTPDNAEFANAREESSASEQIPGGEVGLKGPNDVNGRKRKAVPKGKAKELPASSSAKDAEAADDDDSSAKRCKPSEATVNEKDAAKAKVEPSGSTNTAGDGTQKKTKDNPKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNMESLLSKDILNSRGSLPHAIYPLDSSASAFPYGHQSQQGPPLQSGISNGMETQCSLNPVDAASRRNLSMQLPSLDGFAETASQLAAFWGDDLQSIVQMGFGQNQSQETAFQSQNFHGMKINLGELWFFL* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00436 598 FunFam Basic helix-loop-helix transcription factor 395 467 - -
Eupl07g00436 598 Pfam Helix-loop-helix DNA-binding domain 402 449 IPR011598 GO:0046983
Eupl07g00436 598 MobiDBLite consensus disorder prediction 243 287 - -
Eupl07g00436 598 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 398 448 IPR011598 GO:0046983
Eupl07g00436 598 CDD bHLH_AtBPE_like 388 473 - -
Eupl07g00436 598 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 268 513 IPR024097 GO:0006355
Eupl07g00436 598 Gene3D - 395 469 IPR036638 GO:0046983
Eupl07g00436 598 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 396 467 IPR036638 GO:0046983
Eupl07g00436 598 MobiDBLite consensus disorder prediction 201 390 - -
Eupl07g00436 598 MobiDBLite consensus disorder prediction 210 233 - -
Eupl07g00436 598 MobiDBLite consensus disorder prediction 328 358 - -
Eupl07g00436 598 SMART finulus 404 454 IPR011598 GO:0046983
Eupl07g00436 598 MobiDBLite consensus disorder prediction 374 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g00436 Eupl-Chr7 10530662 10534256 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00436 305 577 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G23690 49.275 5.71e-71 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl07g00436 HLH 8.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g00436 - - ming:122088285 872.463