Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00379 ATGGCCGATCGTAGTGCCGCTGGTGCTGCTGGTGCTATTGTTGCCCGACCTATATGGATGAAACAAGCAGAAGAGGCGAAGTTGAAGAGTGAGGCTGAGAAAGCTGCTGCTGCGAAAGCTGCGTTCGAAGCCACGTTCAAGGATTTGGAGAAAAATGCTGTCAAAGAACCTGCTTTTTCCGATAGTGATGGGGAAGAAGCCGAGGATCTGGTGAAGAACAAGCCTCTGGGTCCTGTTGATCCTGCAAAATGCACGGCTGCTGGCGCTGGGATTGCTGGTGGTGCAGCTTGCGTCGCTTCCTCCTTTGCTGTGGTCACTAAGGATTCTGATGGGCGGAAGATCCCCGATGGGGGTGCTCAGCTTAAAGTCAAGATTTGTCCTGGTGTTGGCGTTGGAGGATCCGATCAGGAAGGCATGGTGAAGGATCAAGGAGATGGGACTTACACTGTTACTTATGTTGTTCCGAAGAGAGGGAATTACATGGTGCACGTTGAGTGCAATGGGAAACCCATCATGGGAAGCCCATTTCCGGTGTTCTTCAGTGCAGGTACTGGTGGAGGGTTGCTGGGTCTGCCACCTACAGGTCCGTTTCCTAATCTTGTTAATCAGACTATGCCCAACATGCCAAATTACGCAGGGTCTGTGTCTGGGGCGTTTCCTGGATTGCTCGGAATGATTCCAGGCATTGTCCCTGGTGCATCGGGAGGGGTAATTTTGCCTGGCATTGGAGCATCGCTTGGAGAGGTTTGTCGGGAATACCTGAATGGGCGGTGTGTGAAAACTGATTGTAAGTTCAATCACCCACCTCACAATTTGCTGATGACTGCATTGGCTGCAACAACCACCATGGGGACCCTAAGTCAGGTGCCAATGGCACCTTCCGCCGCTGCAATGGCTGCTGCTCAAGCGATTGTTGCCGCACAAGCACTTCAAGCTCATGCTGCTCAGGTGCAGGCACAGGCCCAGTCTGCGAGAGATTCATCTGGTTCACCTGACAAAGCAGGGAAGGCCGATGCTTTGAAAAAAACACTACAAGTCAGCAATCTCAGCCCACTTCTTACAGCAGAGCAGTTGAAACAGCTTTTTAGTTACTGCGGCACTGTTGTCGAATGTAGCATCACTGATTCGAAGCACTTTGCTTACATTGAATACTCAAAGCCAGAAGAAGCAACTGCAGCACTGGCATTGAATAATATGGATGTTGGGGGACGCCCATTGAATGTTGAGATGGCAAAATCGCTTCCTCCAAAACCAGCTATTCTAAACTCACCCATGAATCAGTCTTCTCTGCCCATGGTGATGCAGCAAGCAGTTGCCATGCAACAGATGCAGTTTCAGCAGGCTCTGATCATGCAACAAACAATGAACTCGCAGCAGGCTGCCAACCGAGCTGCAACGATGAAATCTGCGACAGAGATGGCATCGGCCAGAGCTGCAGAAATAAGTAAAAAGTTAAAAGCCGATGGGGTGGGAAATGAAGAGACGGGAACAAACCGAAAGTCCAGGTCACCATCCACATCTCGGCCAAGATCGAAGTCCAGGTCAAGGTCACCCATCAAGTATCGACGCAGTCGAAGGTCTCGCTCTTTCTCACCTCCAACTCGTCATGCCAGAGACCGCAGATCCAGGTCACCATTGAGATCTCGCCGTCACACAATCTATGGCAGTGAACGGCGGTCCAATAGGGATGTTAAGGATAGCAGTGACAGACCTGGAAGGCGGGAAAGTGAGAGATCACGCGATCATTATTTCTCTGTTTCAAGGAGAAATAGGAGTAGGAGTTTGAGTCCTCGAACAAGAAAATCATCCCGGGTTGGTTCTGCCTCGCCAAAACGTCATAGAGAAGCCTCGCCAAAACGCCATAGAGAAGCCTCGCCAAAACGCCATAGAGAAAGTTTGAGCCCTAGAACAAGGAAATCATCTCGGGTTAGTTCAAGGTCACCAAGGCATCACCGAGGAAGTAGGTCATCCCCAAGACGTACCCATGAGAATACCTCACACCATGGAAGGCGGTCCAGGTCTAAATCTGTGGAAGTTAGGCCTCATTCAGATGATAGAAAAGATAGATCTGAAAAGTTGAAGGTTGACGGAAGAAAGCCCGAGAAAACTGATGATACTATTAAGGAACCTGATCTCCATGCAAAGGATTCAAGGGATTTGAGGGAAGATGGGACTTCAGATTCTTCATCACCAACTCATGGGAAGAACTCTTTGTTATTGGAGGATGAAAACTTAAGAGGTGGAAAAGATGGAAGTAAACGTAAAAGGTCTAGACTGGATGACAAAGATTCTGAGAAACCTGAGGCTACCTCCAAGGATCAAGATCTTGTTGAGAACAACTTGATGGACTTAGGCGAAGATAAAAGGTCTGTGAAGTCTCCAGTGTCGACTCATAAGAGTAATTCAGCTTCTGTGGCTGATAGAACCCATTCTAGAAGTAAGGATTTAAGCAGGTATGAAAAATCAACTTCAGATCATAGAAGACACGAGAAAACGAACACTTCCAGAAGAGAACGGGATTCTTCTGATAAAGATAGAACCCGGACTGGCAATGAGGATTTAAGCAGGCATGGAAGGTCGACCTCGGAGTACAGGAGAAATGAGAAAGTTGAGCCGGTTAGAAGGGAAAAAGATTCTTTTGGTAATGATTCCACATACACGAGGGAAGATAGGAGGGCCACAGATAATTCAAAGTCAAAATACCACAAGAGTGGTTCGAAGCATCCAGAGGATGTTAAAGGGACAAAAGATCGACACAAATCGGAGAGGTCGAAGCTAGAGGAAACTGCTAATGGCAGGAAGGGAATTACCTCTGTTGGTTATGATTCGTCCGGTCCAAAGGATGACAAAATTGTGCGTTCCCCAAAGTTGAAGACGCGTAAGAGTTCATCCTCAGTTGAAGATGGAGCTTCTAGGGATTCAAAAGATCGTACTAGGCATGAAAAATTGATACTGGAGAACAGAAAACAGAAAATAACTGATCCCATCACCACGAAAGAAGGCTATAATGATGATGATTTGGAGGGAGTGGGGGAAGATGGGAATGTTGCTTATCACTCAAAGTCGAAGACTCACGTTGGAAGTCCGAGGGATGATGGAGCCTATTTGGTCACAAAAGATCTAAACAATCGCGAGGAGGTTATATTGGAGCATGAAAAATTTGATGGATCCAATTCCATCAACAATCATGATCACATTGCTCATTACTCACGGACTATGAAAGTGGTCTGA 3231 0.4742 MADRSAAGAAGAIVARPIWMKQAEEAKLKSEAEKAAAAKAAFEATFKDLEKNAVKEPAFSDSDGEEAEDLVKNKPLGPVDPAKCTAAGAGIAGGAACVASSFAVVTKDSDGRKIPDGGAQLKVKICPGVGVGGSDQEGMVKDQGDGTYTVTYVVPKRGNYMVHVECNGKPIMGSPFPVFFSAGTGGGLLGLPPTGPFPNLVNQTMPNMPNYAGSVSGAFPGLLGMIPGIVPGASGGVILPGIGASLGEVCREYLNGRCVKTDCKFNHPPHNLLMTALAATTTMGTLSQVPMAPSAAAMAAAQAIVAAQALQAHAAQVQAQAQSARDSSGSPDKAGKADALKKTLQVSNLSPLLTAEQLKQLFSYCGTVVECSITDSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMAKSLPPKPAILNSPMNQSSLPMVMQQAVAMQQMQFQQALIMQQTMNSQQAANRAATMKSATEMASARAAEISKKLKADGVGNEETGTNRKSRSPSTSRPRSKSRSRSPIKYRRSRRSRSFSPPTRHARDRRSRSPLRSRRHTIYGSERRSNRDVKDSSDRPGRRESERSRDHYFSVSRRNRSRSLSPRTRKSSRVGSASPKRHREASPKRHREASPKRHRESLSPRTRKSSRVSSRSPRHHRGSRSSPRRTHENTSHHGRRSRSKSVEVRPHSDDRKDRSEKLKVDGRKPEKTDDTIKEPDLHAKDSRDLREDGTSDSSSPTHGKNSLLLEDENLRGGKDGSKRKRSRLDDKDSEKPEATSKDQDLVENNLMDLGEDKRSVKSPVSTHKSNSASVADRTHSRSKDLSRYEKSTSDHRRHEKTNTSRRERDSSDKDRTRTGNEDLSRHGRSTSEYRRNEKVEPVRREKDSFGNDSTYTREDRRATDNSKSKYHKSGSKHPEDVKGTKDRHKSERSKLEETANGRKGITSVGYDSSGPKDDKIVRSPKLKTRKSSSSVEDGASRDSKDRTRHEKLILENRKQKITDPITTKEGYNDDDLEGVGEDGNVAYHSKSKTHVGSPRDDGAYLVTKDLNNREEVILEHEKFDGSNSINNHDHIAHYSRTMKVV* 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00379 1076 MobiDBLite consensus disorder prediction 479 495 - -
Eupl07g00379 1076 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 342 413 IPR000504 GO:0003723
Eupl07g00379 1076 Coils Coil 20 52 - -
Eupl07g00379 1076 MobiDBLite consensus disorder prediction 642 657 - -
Eupl07g00379 1076 SUPERFAMILY E set domains 78 178 IPR014756 -
Eupl07g00379 1076 MobiDBLite consensus disorder prediction 550 588 - -
Eupl07g00379 1076 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 283 638 - -
Eupl07g00379 1076 MobiDBLite consensus disorder prediction 946 1005 - -
Eupl07g00379 1076 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 346 406 IPR000504 GO:0003723
Eupl07g00379 1076 SUPERFAMILY RNA-binding domain, RBD 313 424 IPR035979 GO:0003676
Eupl07g00379 1076 SMART rrm1_1 343 409 IPR000504 GO:0003723
Eupl07g00379 1076 ProSiteProfiles Filamin/ABP280 repeat profile. 76 180 IPR017868 -
Eupl07g00379 1076 MobiDBLite consensus disorder prediction 56 75 - -
Eupl07g00379 1076 MobiDBLite consensus disorder prediction 739 794 - -
Eupl07g00379 1076 Gene3D Immunoglobulins 78 184 IPR013783 -
Eupl07g00379 1076 Coils Coil 307 327 - -
Eupl07g00379 1076 CDD RRM_SF 344 409 - -
Eupl07g00379 1076 SMART flmn_3 80 183 IPR001298 GO:0005515
Eupl07g00379 1076 MobiDBLite consensus disorder prediction 670 728 - -
Eupl07g00379 1076 ProSiteProfiles Zinc finger C3H1-type profile. 249 270 IPR000571 GO:0046872
Eupl07g00379 1076 MobiDBLite consensus disorder prediction 461 1031 - -
Eupl07g00379 1076 MobiDBLite consensus disorder prediction 56 73 - -
Eupl07g00379 1076 MobiDBLite consensus disorder prediction 608 631 - -
Eupl07g00379 1076 Gene3D - 301 420 IPR012677 -
Eupl07g00379 1076 MobiDBLite consensus disorder prediction 808 930 - -
Eupl07g00379 1076 MobiDBLite consensus disorder prediction 505 531 - -
Eupl07g00379 1076 Pfam Filamin/ABP280 repeat 78 176 IPR017868 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g00379 Eupl-Chr7 8890639 8898385 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00379 323 412 Eukaryotic Initiation Factors Gene Family AT2G23350 35.417 1.15e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g00379 - - tss:122657754 1099.35