Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00281 ATGGATCATCAGGGCTTATCCTCAAACCTTAATTCACAGAAAACCCGGTTCGCTCTTCGCTTCCTTCGAGCACTTGCAAGAATAAAAATGAATACACCCACCAGTACTAATGGCACCATACGACGAGGACGATGTAGCCGTAGAATTAAGCTTGTCGCTGATGCTTCCATGGCTTCTGTTGTTGGGTCTAGGAGATCTTGGAGCCGTGCCGTACTTCTCAACATTCGAAGCCGACGTCGACGCTGTGCTTTGGTAAGACGAAAGGTGGTTGGTTTGAAGAAGAAGAAGAAGAGAGATTTAGACGCTGGCGATAAGCCCGGGCAAGAGTTAAGCCGAGCGAATGAACTCCGGCGACTTGTACCGGGTGGTGATGCCATGGATTTCTGCAGTTTGTTGGAGGAAACTGCTCATTATATAAAGTGCCTTAACACACAGAGAAAGAAAGGTTCAAGATCTGGTTGGATCGGATATGCACCTCATCCTTCAAAGGAGCTTCAATGGAATTTGAGTTTCTTGTTGAATGAGAATGACCATCAGCCACCATCACGACACCAAGCCGTGTACTGTAAGGAAACATGTTACAGAAAAAACACGCAAAGCCCTCTGGTGGGGAACGAAGTCGAATTTCTAGGGTTTATCACACCAAACGAAGCAATCAAGATGAGCATGACCCAATTCGCAATGATCGAGGAGTTGGCTTTTCTTATTAAGGACAATTTACCTTGCAAGCATCTTGTTCTCTCCATTGAAGAGGCCTTGGTTGATTTCCTTCAAAACGACACAAGTCCAGATGGAGTCTTGGAGCTGAAACCAATGAGTCCGTACAACCGCCTTCTCTTGCATCGTCTTGCAGATATTTTTGGGTTTACCCATGAATCCATTGGTGAAGGAGATGATCGCCATTTAATATTACAGCGATGCCCAGAGTCATCAATACCTTCAGTCCTTATTAGTGATATTCTGTGGCAATATGATGAGTATCAATCTCCCACTACGTCGCCGCACCAACTCTTAAGGAGAAAAGAGGCTTTACCAGCCTTGAAGACAAATCCAGCATCTTTTCAATCTTCATTAGAGGAGAGAGAAGCAGCTTATTTGGCTGCTCGTGAGCGAATCTTTTCAATGGATGATGGTGAGATAAAAGAATCATTCACACCAAAGCAGCGGAACATCCCTGTGGTTGCGCGCCGGATGATTGCACATGCGTTAGGCCAAAGGATTTGTTCTAATTCATCCAGTGAGAAGGTCACTCTTCAAAACAGTAAAGAAGAAGGGCAGACTGAGGACTTAAAGAGTAAAGAGAAGAATGAAGGCCGTCTAAATCTGAGCTTGAGAGCTTCACAGGAAGCCACTGTAATGGCCAGCCAAAATGTCAGCTCATGTGAGAGGAAGATGCATGGTAAACCAGACAGCAGTATAGCCTCTAGTAGCGCATCGCAGGGTGAAATGAAGGTGCACAAGAAACCATCCGGCAATAGATCCACTAATGGTGGTGCACCACAGACTGGAAGCACTGGCAGAGTTGTTTGTAAGGACAATTTGAAAGAGGAACATTTGGGAGCCGCGAAGAGGATGTTTGCGCAGGCTTTGGGCCTACAAGGAACCAAGGAGATTAATGGTCTTCTTTTGAAATGCACTGAAGCAAAACCAATTGGCAAGGAGTAG 1665 0.4553 MDHQGLSSNLNSQKTRFALRFLRALARIKMNTPTSTNGTIRRGRCSRRIKLVADASMASVVGSRRSWSRAVLLNIRSRRRRCALVRRKVVGLKKKKKRDLDAGDKPGQELSRANELRRLVPGGDAMDFCSLLEETAHYIKCLNTQRKKGSRSGWIGYAPHPSKELQWNLSFLLNENDHQPPSRHQAVYCKETCYRKNTQSPLVGNEVEFLGFITPNEAIKMSMTQFAMIEELAFLIKDNLPCKHLVLSIEEALVDFLQNDTSPDGVLELKPMSPYNRLLLHRLADIFGFTHESIGEGDDRHLILQRCPESSIPSVLISDILWQYDEYQSPTTSPHQLLRRKEALPALKTNPASFQSSLEEREAAYLAARERIFSMDDGEIKESFTPKQRNIPVVARRMIAHALGQRICSNSSSEKVTLQNSKEEGQTEDLKSKEKNEGRLNLSLRASQEATVMASQNVSSCERKMHGKPDSSIASSSASQGEMKVHKKPSGNRSTNGGAPQTGSTGRVVCKDNLKEEHLGAAKRMFAQALGLQGTKEINGLLLKCTEAKPIGKE* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00281 554 Gene3D - 220 343 IPR036867 GO:0003676
Eupl07g00281 554 Pfam SUZ domain 346 376 IPR024771 -
Eupl07g00281 554 SMART R3H_4 230 307 IPR001374 GO:0003676
Eupl07g00281 554 ProSiteProfiles R3H domain profile. 243 308 IPR001374 GO:0003676
Eupl07g00281 554 MobiDBLite consensus disorder prediction 410 440 - -
Eupl07g00281 554 MobiDBLite consensus disorder prediction 490 508 - -
Eupl07g00281 554 ProSiteProfiles SUZ domain profile. 311 377 IPR024771 -
Eupl07g00281 554 CDD R3H_encore_like 242 307 - -
Eupl07g00281 554 MobiDBLite consensus disorder prediction 421 440 - -
Eupl07g00281 554 PANTHER CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEIN 229 482 - -
Eupl07g00281 554 MobiDBLite consensus disorder prediction 454 508 - -
Eupl07g00281 554 SUPERFAMILY R3H domain 233 335 IPR036867 GO:0003676
Eupl07g00281 554 Pfam R3H domain 245 305 IPR001374 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g00281 Eupl-Chr7 6362376 6390186 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00281 13 147 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43060 37.931 1.38e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g00281 - - psom:113314433 406.371