Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00272 ATGGCATTGCCGTTGCAGAAGTTCATGCACGAAGAAGAAGAGACCGATACCGGCACTCCGATACGTTATCTTCCCCTCCATCACGTCTACTCCGCCACTTCTCCCTGCGTTAGCGCCAGCGGATACTCCAACGTCATGTCCAAGAAGGTGAAAGCTCGAAAACTTGTCGACTCCTTCGAAGATCCTCCTGATGACGATCTGTCACAGCAGAAGAAGCCATCTCTCCTTCGCGTCTACACCCGGCGCCCCAAGAAGCCTCGGCATTCTGCCAATAAGCCCTCATTCTTCGATTCTTTGGTAGAGCGTGTCAAATCAGAATCCAAAAGCCCTAACAATTTAGGCGAAGACTGTGCTTCGGAGGACATTGACAGTGTCAAGGATCGAGCTGATGAATCCGGTGTCGGGTTCGAATCGGTTAAGGTTAGCAGAATTATCAAGAAACAGAAGAAAAAAAATCGGAATTGGGAGCTGCTCAATCTGGGGGTTGATTCGAGCTATTTTGGCGGTCTAGATTGCCCTCGATTGAGAGAAAGCAGAGCTCATATCAAGAGTGGCGAGTCTAATGGGACGAGGAAACGCAAGTCATCCAAGGATTGCCAGGAGCCTGATTCAAACAAGGCTTCTTCTGGTTCGGTTCGCACAAAGAGATGGGTTGAGTTGAGTTTCGAGGATGTTGATCCAAACACATTCATTGGCTTACCATGCAAGGTGTATTGGCAGTTGGATGTTATATGGTATAATGGTCACATCTCGGGGTATAATTCAGAGACCAAGCATCATGATATTAAATACGAGGATGGTGACAATGAAAGTTTGATCCTTTCAAACGAGAAGATTAAATTTTATCTTTCTCGCGAGGAAATGCAGCGTTTAAACTTGAGATGCAGTGTTACGAACAAGGATAGCAGTGTTACGAACAAGGATAATAATGACCTGGATTATGGTGAGATGCTTGTATTGGCTGCTAGTTTCGATGACTGCCAAGAGCTTGAACCTGGGGACATCATATGGGCAAAACTTACAGGTCATGCTGTGTGGCCAGCAGTTGTTGTGAAGGAATCGGATGTTGGCGCACGTAAAGGTCTTAAGCCAAATTTGGTAGAGAGATCAGTTCCTGTGCAATTTTTTGGAACCCATGATTTTGCGAGGATTAGCATGAAACAGGTTATCTCATTTCTCAGGGGCCTTCTTTCTTCTTTCCATTTGAAGTGCAAGCAAACACGCTTCCGTCGAAGTTTAGAAGAAGCGAAAATGTATCTAAGTGAACAAAAGCTTCCAAATAGAATGCTACGGCTGCAAAAGGGCATTGGAGCTGATGATTCTGAGAGTGTAAGTGGAGAGGACGAGGGAAGTATCGATTCTGGTGATGATTACAAAGGAGATGAGAGGGTGCAGAGAACACTGGAGTGCATTAAAACTTGTCCATTTGAAACAGGCAATTTGCGCGTAATAAGCCTAGGAAAGATTGTTAGGGACTCAGAGTATTTCCATAATGAGCGATACATCTGGCCTGAAGGATATACTGCTGTGAGGAAGTTTATTTCAATAAAAGATCTGAGTGTAAATGCCTTTTACAAAATGGAAGTCCTGAGAGATCCCGAATCAACGTTCCGACCATTATTTAGAGTAACATTGGATAACGGAGAACAGTTTAAAGGATCCACTCCTTCTGCTTGCTGGAAGAAAATTTACAGAAGGATAAAGAAGATGCAGGACAATTTGTCTAATGGTTTTCATGCTGAAGGCGAGGTGGAAAGGATTGACAAATCTGGTTCTCATATGTTTGGTTTTTCAAATCGTAAAGTTTTTAAACTTATAAAGGAGTTATCAAGTTCTAGATTGTCCTCAATATACTCTGGTTGCAAGCTAGCCTTGGAAAGTTATCGAGACCTACCTGTTGGTTTCAGGCCTGTTCGTGTTGACTGGAAAGACCTTGATAAGTGCAGTGTTTGCCACATGGATGAGGAATACGAGAATAACTTGTTCCTACAGTGTGAAAAATGCCGAATGATGGTACATGCTAGATGCTATGGTGAATTGGAACCTGTTGATGGGGTATTGTGGTTATGCAACTTATGTCGGCCGGGTGCACCCGATTCTCTTCCACCCTGCTGCCTGTGTCCTGTTATAGGGGGTGCAATGAAGCCTACTACTGATGGACGCTGGGCTCATCTGGCCTGTGCCATATGGATACCTGAAACTTGCCTATCAGATATCAAGAGAATGGAGCCCATTGATGGGCTGAACAGAATCAATAAGGACCGCTGGAAGCTTCTATGTAGCATTTGTGGTGTTTCTTATGGAGCCTGCATCCAGTGTTCAAATAGTACCTGTCGTGTAGCATATCATCCACTTTGTGCACGTGCCGCTGATCTTTGTGTTGAGCTTGAGGATGAGGACAGACTTCATCTGATGTCTGTTGACGAGGAGGATGATGATGATCAATGTATTCGTCTACTTTCCTTCTGCAAGAAGCATAGACAGCCATCTAATGAGCGTTCACCTGCTGATGAACAAATTGGGCCAATTACCCGGCACTGTTCCAACTACACTCCTCCGTCTAATCCATCTGGCTGTGCTCGTAGTGAGCCTTATGATTTCTTGGGGAGGAGAGGACGGAAAGAACCTGAAGCCCTTGCTGCTGCATCCTTGAAACGATTATTTGTGGAAAACAGGCCATACTTGGTTGGTGGTTACTGCCAAAGTGGATCCTTGAAAGTACCCTCATCTGATGAACTTGTGGTCTCGAGATTCTCTTTTAGTCTTCAAAATTTGAAAACATCTCGACTTGAGAGTCCCATGAGTGTGCTTTCTATGGCTGAGAAGTACAAATACATGAGGGAAACCTTCAGAAAGAGACTAGCATTTGGGAAATCAGGAATACATGGGTTCGGCATCTTTGCAAAGCATCCACATAAGGCGGGGGATATGGTGATTGAATATACGGGCGAACTTGTTAGACCCTCAATAGCTGACAGGAGGGAACATTTCATATACAATTCGTTAGTGGGTGCTGGGACATATATGTTCCGAATAGACGATGAGCGGGTCATCGATGCCACCAGGGCAGGGAGCATTGCTCATTTAATTAATCACTCATGTGAACCAAATTGTTATTCAAGAGTAATTAGTGTTCATGGTGACGAGCATATAATTATATTTGCAAAAAGAGATGTTAACCAATGGGAAGAATTGACATATGATTACAGATTTTTCTCGATTGATGAACAACTTGCATGCTATTGTGGCTTCCCAAGATGTCGTGGTGTCGTCAATGACACTGAAGCAGAGGAGCAAGTGGCGAAGCTATGTGTACCTCGCAGCAAATTGATCGATTGGACAGAAGAATAA 3351 0.4414 MALPLQKFMHEEEETDTGTPIRYLPLHHVYSATSPCVSASGYSNVMSKKVKARKLVDSFEDPPDDDLSQQKKPSLLRVYTRRPKKPRHSANKPSFFDSLVERVKSESKSPNNLGEDCASEDIDSVKDRADESGVGFESVKVSRIIKKQKKKNRNWELLNLGVDSSYFGGLDCPRLRESRAHIKSGESNGTRKRKSSKDCQEPDSNKASSGSVRTKRWVELSFEDVDPNTFIGLPCKVYWQLDVIWYNGHISGYNSETKHHDIKYEDGDNESLILSNEKIKFYLSREEMQRLNLRCSVTNKDSSVTNKDNNDLDYGEMLVLAASFDDCQELEPGDIIWAKLTGHAVWPAVVVKESDVGARKGLKPNLVERSVPVQFFGTHDFARISMKQVISFLRGLLSSFHLKCKQTRFRRSLEEAKMYLSEQKLPNRMLRLQKGIGADDSESVSGEDEGSIDSGDDYKGDERVQRTLECIKTCPFETGNLRVISLGKIVRDSEYFHNERYIWPEGYTAVRKFISIKDLSVNAFYKMEVLRDPESTFRPLFRVTLDNGEQFKGSTPSACWKKIYRRIKKMQDNLSNGFHAEGEVERIDKSGSHMFGFSNRKVFKLIKELSSSRLSSIYSGCKLALESYRDLPVGFRPVRVDWKDLDKCSVCHMDEEYENNLFLQCEKCRMMVHARCYGELEPVDGVLWLCNLCRPGAPDSLPPCCLCPVIGGAMKPTTDGRWAHLACAIWIPETCLSDIKRMEPIDGLNRINKDRWKLLCSICGVSYGACIQCSNSTCRVAYHPLCARAADLCVELEDEDRLHLMSVDEEDDDDQCIRLLSFCKKHRQPSNERSPADEQIGPITRHCSNYTPPSNPSGCARSEPYDFLGRRGRKEPEALAAASLKRLFVENRPYLVGGYCQSGSLKVPSSDELVVSRFSFSLQNLKTSRLESPMSVLSMAEKYKYMRETFRKRLAFGKSGIHGFGIFAKHPHKAGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCEPNCYSRVISVHGDEHIIIFAKRDVNQWEELTYDYRFFSIDEQLACYCGFPRCRGVVNDTEAEEQVAKLCVPRSKLIDWTEE* 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00272 1116 FunFam Histone-lysine N-methyltransferase 635 697 - -
Eupl07g00272 1116 Pfam F/Y-rich N-terminus 479 529 IPR003888 GO:0005634
Eupl07g00272 1116 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 639 697 IPR013083 -
Eupl07g00272 1116 ProSiteProfiles SET domain profile. 952 1070 IPR001214 GO:0005515
Eupl07g00272 1116 CDD ePHD_ATX1_2_like 704 826 IPR041956 -
Eupl07g00272 1116 ProSiteProfiles Extended PHD (ePHD) domain profile. 701 827 IPR034732 -
Eupl07g00272 1116 Pfam PWWP domain 333 420 IPR000313 -
Eupl07g00272 1116 SMART fyrc_3 540 634 IPR003889 GO:0005634
Eupl07g00272 1116 MobiDBLite consensus disorder prediction 828 858 - -
Eupl07g00272 1116 SUPERFAMILY SET domain 950 1089 IPR046341 -
Eupl07g00272 1116 MobiDBLite consensus disorder prediction 181 210 - -
Eupl07g00272 1116 Pfam F/Y rich C-terminus 538 618 IPR003889 GO:0005634
Eupl07g00272 1116 SMART set_7 952 1076 IPR001214 GO:0005515
Eupl07g00272 1116 SMART PHD_3 647 694 IPR001965 -
Eupl07g00272 1116 SMART PHD_3 759 827 IPR001965 -
Eupl07g00272 1116 PANTHER PHD FINGER PROTEINS 35 1104 - -
Eupl07g00272 1116 CDD PWWP_AtATX1-like 331 426 - -
Eupl07g00272 1116 MobiDBLite consensus disorder prediction 181 201 - -
Eupl07g00272 1116 ProSiteProfiles PWWP domain profile. 332 395 IPR000313 -
Eupl07g00272 1116 SMART PWWP_4 330 393 IPR000313 -
Eupl07g00272 1116 MobiDBLite consensus disorder prediction 844 858 - -
Eupl07g00272 1116 Gene3D - 232 281 - -
Eupl07g00272 1116 Pfam SET domain 963 1069 IPR001214 GO:0005515
Eupl07g00272 1116 ProSitePatterns Zinc finger PHD-type signature. 648 693 IPR019786 -
Eupl07g00272 1116 ProSiteProfiles FYR domain FYRN motif profile. 473 532 IPR003888 GO:0005634
Eupl07g00272 1116 CDD Tudor_Agenet_AtEML-like 231 281 - -
Eupl07g00272 1116 FunFam Histone-lysine N-methyltransferase 886 1109 - -
Eupl07g00272 1116 CDD SET_SETD1-like 939 1088 - -
Eupl07g00272 1116 FunFam Histone-lysine N-methyltransferase 699 829 - -
Eupl07g00272 1116 ProSiteProfiles Post-SET domain profile. 1076 1092 IPR003616 -
Eupl07g00272 1116 SMART fyrn_3 488 532 IPR003888 GO:0005634
Eupl07g00272 1116 Gene3D - 319 430 - -
Eupl07g00272 1116 SUPERFAMILY Tudor/PWWP/MBT 326 428 - -
Eupl07g00272 1116 CDD PHD_ATX1_2_like 647 693 IPR042010 -
Eupl07g00272 1116 Pfam PHD-zinc-finger like domain 703 826 - -
Eupl07g00272 1116 Gene3D SET domain 936 1104 IPR046341 -
Eupl07g00272 1116 MobiDBLite consensus disorder prediction 437 459 - -
Eupl07g00272 1116 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 698 829 IPR013083 -
Eupl07g00272 1116 ProSiteProfiles FYR domain FYRC motif profile. 536 622 IPR003889 GO:0005634
Eupl07g00272 1116 ProSiteProfiles Zinc finger PHD-type profile. 645 696 IPR019787 -
Eupl07g00272 1116 Pfam PHD-finger 660 694 - -
Eupl07g00272 1116 Gene3D - 474 614 - -
Eupl07g00272 1116 SUPERFAMILY FYVE/PHD zinc finger 640 712 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g00272 Eupl-Chr7 6075319 6124477 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00272 648 795 C2H2 Transcription Factor Family AT3G14740 39.073 2.38e-27 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Eupl07g00272 zf-HC5HC2H_2 2.7e-32 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g00272 - - nnu:104589356 1757.27