Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00237 ATGGATTACGACGCCGGAATTCAGATGTCGAGAGGGGTGGCTGTGACGGAGGGATCCTCGCTCTCCCCAGCGTTGGATGAAGATACAATGTGGCAAGTGAACTTGAGTTCTAATGAAACTATGGAATCTGTGCCCTATCCCGAGCGACCAGCAGAGCCAGACTGTGCTTATTACATCAGGACCGGCCTATGTAGATATGGAATGACGTGCCGATTTAATCATCCTCCTAATAGGAAGCTGGCTATTGCGGCTGCAAATATTAAGGGAGGGTACCCTGAAAGAATAGGGCAACCTGAATGTCAGTACTACTTGAAGACAGGAACATGCAAGTTTGGAGCCACATGCAAGTTTCATCACCCAAGAGACAAGGCTGGAATTGCCGGAAGAGTTCTATTAAATATTTTAGGCTTTCCACTCCGCCCGAATGAGAAGGAGTGTGCTTATTATTTAAGAACTGGACAGTGTAAGTTTGGGAACACTTGTAAATTCCACCACCCATCCCCATCCAATACGATGGTTTCATTGCGTGGCTCGCCTGTTTATCCTCCTGTACATTCCCCAACAACTCCTGGCCAGCAGTCTTATCCAGGAGGAATGACAAACTGGCCGTTGTCAAGGGCCTCTTTTATTCCTAGCCCACGTTGGCAAGGTCCTTCGAGTTATACTCCGTTGATTCTACCTCAGGGGGTGGTACCAGTTTCTGGCTGGAATGCGTATAGTGGTCAGCTGGGGTCAGTTTCATCTTCAGAGAGCCAGCAGCAAACACTGGGAACTAGTCAGTTTTATGGGACTTCACGGCAGAGTGAAACAACAAGTGCAGGAGCTCAAGGAACTTTTTCTTCCTACCGTTCTGGCTCTGCCCCTATTGGGTTTTATGCATTGCAGAGGGAGAACATATTTCCTGAGAGACCTGACCAACCTGAATGCCAGTTTTACATGAAGACAGGGGATTGCAAGTTTGGTGCAGTTTGCCGGTTCCATCACCCTAAAGAGAGATTGATTCCTGTTCCAAACTGTATGTTGAGTCACTTGGGCCTTCCACTACGCCCGGGAGAGCCTTTGTGCATCTTTTATTCTCGTTATGGTATCTGCAAATTTGGTCCCAACTGCAAATTTGACCATCCTTTGGAAAGCTTTACATATGGTCTGTCTGCATCATCTTCAGCTGATGTCCCGATTGTTCGGCGTTTGTTAGGTTCCTCGTCAGGAATTGCTGCATTACCTTTGTCATCGGAAGGGCCTGTTGAAGCAGGCTCAGGAAAGTCCAGGCGACTTTCACTGTCAGAGACGCGGCAGATGCCATCTGATGATGAAAACATTGATGCAGAGGGATCACACACTACCTCAAGCATTGGGCCAGTTGCTTCTTTTTCTTAA 1377 0.4771 MDYDAGIQMSRGVAVTEGSSLSPALDEDTMWQVNLSSNETMESVPYPERPAEPDCAYYIRTGLCRYGMTCRFNHPPNRKLAIAAANIKGGYPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVLLNILGFPLRPNEKECAYYLRTGQCKFGNTCKFHHPSPSNTMVSLRGSPVYPPVHSPTTPGQQSYPGGMTNWPLSRASFIPSPRWQGPSSYTPLILPQGVVPVSGWNAYSGQLGSVSSSESQQQTLGTSQFYGTSRQSETTSAGAQGTFSSYRSGSAPIGFYALQRENIFPERPDQPECQFYMKTGDCKFGAVCRFHHPKERLIPVPNCMLSHLGLPLRPGEPLCIFYSRYGICKFGPNCKFDHPLESFTYGLSASSSADVPIVRRLLGSSSGIAALPLSSEGPVEAGSGKSRRLSLSETRQMPSDDENIDAEGSHTTSSIGPVASFS* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00237 458 ProSiteProfiles Zinc finger C3H1-type profile. 49 77 IPR000571 GO:0046872
Eupl07g00237 458 ProSiteProfiles Zinc finger C3H1-type profile. 94 122 IPR000571 GO:0046872
Eupl07g00237 458 ProSiteProfiles Zinc finger C3H1-type profile. 349 377 IPR000571 GO:0046872
Eupl07g00237 458 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 143 166 IPR000571 GO:0046872
Eupl07g00237 458 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 52 76 IPR000571 GO:0046872
Eupl07g00237 458 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 97 121 IPR000571 GO:0046872
Eupl07g00237 458 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 351 375 IPR000571 GO:0046872
Eupl07g00237 458 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 305 330 IPR000571 GO:0046872
Eupl07g00237 458 Gene3D - 127 176 - -
Eupl07g00237 458 ProSiteProfiles Zinc finger C3H1-type profile. 140 168 IPR000571 GO:0046872
Eupl07g00237 458 SUPERFAMILY CCCH zinc finger 306 333 IPR036855 GO:0046872
Eupl07g00237 458 Gene3D - 48 126 - -
Eupl07g00237 458 Gene3D - 302 388 - -
Eupl07g00237 458 MobiDBLite consensus disorder prediction 250 279 - -
Eupl07g00237 458 MobiDBLite consensus disorder prediction 412 458 - -
Eupl07g00237 458 FunFam Zinc finger nuclease 2 48 125 - -
Eupl07g00237 458 ProSiteProfiles Zinc finger C3H1-type profile. 303 331 IPR000571 GO:0046872
Eupl07g00237 458 SUPERFAMILY CCCH zinc finger 352 378 IPR036855 GO:0046872
Eupl07g00237 458 MobiDBLite consensus disorder prediction 444 458 - -
Eupl07g00237 458 SUPERFAMILY CCCH zinc finger 98 123 IPR036855 GO:0046872
Eupl07g00237 458 SUPERFAMILY CCCH zinc finger 54 77 IPR036855 GO:0046872
Eupl07g00237 458 SUPERFAMILY CCCH zinc finger 141 168 IPR036855 GO:0046872
Eupl07g00237 458 PANTHER PROTEIN PHOSPHATASE RELATED 36 390 - -
Eupl07g00237 458 SMART c3hfinal6 49 76 IPR000571 GO:0046872
Eupl07g00237 458 SMART c3hfinal6 349 376 IPR000571 GO:0046872
Eupl07g00237 458 SMART c3hfinal6 94 121 IPR000571 GO:0046872
Eupl07g00237 458 SMART c3hfinal6 140 167 IPR000571 GO:0046872
Eupl07g00237 458 SMART c3hfinal6 303 330 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g00237 Eupl-Chr7 5200381 5221554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00237 30 447 C2H2 Transcription Factor Family AT3G02830 61.085 1.52e-175 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Eupl07g00237 zf-CCCH 3.5e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g00237 - - msin:131239576 815.453