Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00230 ATGTACCCATCATCTCACAGGCCCACGGGCTCAGGAGGTTTAACCCGCTACGGCTCAGCTCCAGGCTCCTTCTTAACCAGCGTCGTTGATTCTGTGATCGGCACTGACGAAGAATTCTCCACTGTTGGTTCAGAATCTCTAATGGGTCGGTACTTCTCCGGTGATTCCTCGTCCCTGACGTCCGAGTCAAACTGCAAGACCAACGTATTACCTGATCTCAAAGACGCTTATCGAAACGAACGTGTTGGTGGTGGTACAGGCCTGGAGAGAGCCTACGGTTTGAATCAGATAGCCGTTGGGGATTTTGCAACGGCTAGTAATTTGAGACCTGGTGGATCCTCTCCGTTGATTCGACACAGTAGCTCTCCTGCTGGTTTTTTTAACCATCTCATGGTTGATAACGCAGGTTTTTCTATTACAAGGGGAATGGGAGGCTATTGCTCCCAAGCAGGGACTAGTGGTGGCCAAGGAATTCCAAATGGAAGGTTGAAGTCTCAGTTGAGCTTCACAAGACAAGATTCTCTCTCACAGATTTCTGAAGTTGGTGAGAGTGTTGTGGGTGGGAGTAGCTCCGATGAGGGCCCCGGAAACGCCGGACAGTCCTACATTTCCGGCAGCTTTCCGATGGGCTCATGGGACGATACAAATGCTATCGTGTTTTCTGCTCCGCCGAACAAACGAGCTAATAAGAATGTCAACGGCGACATTGTCACTGCTCTCAATGGCTTAGATTCTCAGTCTCAGTTTAGCTTACCAAGGACATCACTAGAGATGGCTAGTGTGGAGAATCTCTTTCAGATCCAACAAGACTCTGTTACTTGCAAAACCCGTGCTAAGCGTGGATGCGCGACTCACCCGCGAAGCATTGCCGAGAGGGAGAGAAGAACCAGGATTAGCGAAAAGTTGAGGAAACTGCAAGAGCTTGTTCCTAACATGGACAAGCAAACAAACACTGCAGACATGTTAGAATTGGCAGTCCAACACATCAAAGGACTCCAGAATGAAGTTCAGAAACTGAACAAAGATCTTGAGAACTGCACTTGTGGATGCAAGCAATCAACATAA 1065 0.4845 MYPSSHRPTGSGGLTRYGSAPGSFLTSVVDSVIGTDEEFSTVGSESLMGRYFSGDSSSLTSESNCKTNVLPDLKDAYRNERVGGGTGLERAYGLNQIAVGDFATASNLRPGGSSPLIRHSSSPAGFFNHLMVDNAGFSITRGMGGYCSQAGTSGGQGIPNGRLKSQLSFTRQDSLSQISEVGESVVGGSSSDEGPGNAGQSYISGSFPMGSWDDTNAIVFSAPPNKRANKNVNGDIVTALNGLDSQSQFSLPRTSLEMASVENLFQIQQDSVTCKTRAKRGCATHPRSIAERERRTRISEKLRKLQELVPNMDKQTNTADMLELAVQHIKGLQNEVQKLNKDLENCTCGCKQST* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00230 354 Gene3D - 283 352 IPR036638 GO:0046983
Eupl07g00230 354 MobiDBLite consensus disorder prediction 181 203 - -
Eupl07g00230 354 Pfam Helix-loop-helix DNA-binding domain 287 333 IPR011598 GO:0046983
Eupl07g00230 354 FunFam Transcription factor bHLH130 family 283 352 - -
Eupl07g00230 354 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 282 332 IPR011598 GO:0046983
Eupl07g00230 354 CDD bHLH_AtbHLH_like 287 339 IPR045239 -
Eupl07g00230 354 SMART finulus 288 338 IPR011598 GO:0046983
Eupl07g00230 354 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 285 346 IPR036638 GO:0046983
Eupl07g00230 354 Coils Coil 322 349 - -
Eupl07g00230 354 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 96 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g00230 Eupl-Chr7 5087174 5093312 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00230 10 352 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 44.959 3.35e-84 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl07g00230 HLH 3.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g00230 - - nnu:104610833 485.723