Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00200 ATGAGCGGAGGAGGGGGCAACATAAATTCGGTATTCTACGCAGATTCGTATCATCCGATCCAAGCGGGAAGCATCGACGGCACAGATATTCTTCCTCACGACAACGCCGTTTACAGAGCTCTCCTCTGTTCATCTGCTGGCCTCTATGACCCGTTTAGGGATCCTAAGGTTATTGGAGACCCTTATTGTACTTTGTTTGTTGGACATCTTTCCCACCTCACAACCGAAGACATGCTGCGAAAGGCTATGAGTAGGTATGGACGGGTGAAGAATCTGCGATTGGTTCGACATATCGTAACCGGTGCCTCATGTGGTTATGGGTTTATTGAGTATGAAAATGAAAGAGAGATGCGGCGTGCATATGAGGATGCTCACCATTCCTTCATTGATGATTGTGAAATTATAGTGGATTATAATCGGCAGCAGTTAATGCCAGGGTGGATCCCTCGAAGATTAGGAGGAGGCCTTGGCGGTAAGAAGGAGTCCGGTCAGCTTCGCTTTGGAGGACGAGAGAGACCATTTCGAGCTCCCCTGCGTCCGATACCCTTGGATGATTTGAAAAGGCTTGGCATTCCACCTCCCCCAGAAGGACGGTATATGACACGCTTTCAGGTCCCATCACCCCCTAAAAGACAAAGGAGCTCCGTGGACAAGGAGGAACGCTCTCACTCGCAGAAGCGCCACAAACATAGTAAACATTCCCATCGGCATGAAAGGAGAAGGTCTACAAGTAGAGATCACCCTTCTGACTGA 753 0.4914 MSGGGGNINSVFYADSYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPFRDPKVIGDPYCTLFVGHLSHLTTEDMLRKAMSRYGRVKNLRLVRHIVTGASCGYGFIEYENEREMRRAYEDAHHSFIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIPLDDLKRLGIPPPPEGRYMTRFQVPSPPKRQRSSVDKEERSHSQKRHKHSKHSHRHERRRSTSRDHPSD* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00200 250 Gene3D - 50 171 IPR012677 -
Eupl07g00200 250 SMART rrm1_1 64 137 IPR000504 GO:0003723
Eupl07g00200 250 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 12 234 - -
Eupl07g00200 250 SUPERFAMILY RNA-binding domain, RBD 49 169 IPR035979 GO:0003676
Eupl07g00200 250 MobiDBLite consensus disorder prediction 225 242 - -
Eupl07g00200 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 65 134 IPR000504 GO:0003723
Eupl07g00200 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 63 141 IPR000504 GO:0003723
Eupl07g00200 250 MobiDBLite consensus disorder prediction 152 250 - -
Eupl07g00200 250 FunFam Small nuclear ribonucleoprotein U11/U12 subunit 35 50 171 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00200 63 138 Eukaryotic Initiation Factors Gene Family AT2G23350 27.632 2.15e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g00200 K13155 - nnu:104601990 410.994