Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00185 ATGGATTCGGAGGATGACATGCACGATGCGAACGATGTGGAGTCTCTTGATGACTTCTATAGCGAAGAGACGGCCATGGCGAGCGACGACGGTGACGGAGATTACGAGTTCATCGACAACGATTCTGATGATTCAGACGACAGCACATCGCATCGGCCACAGCAAAATTATTCCATTTTGAGTGAGGCTGATATACATCAACATCAGGAGGAAGATATCACAAGGATATCTACTGTGCTTTCCATATCAAGAGTTTCGGCTAGCATCCTGCTTCGCCATTATAATTGGAGTGTCGGTAAAGTGCACGATGCATGGTTTGCAGATGAAGAAATAGTTCGCAAGGCTGTTGGCTTGTTGGAGAAACCAGTTGTTCAAATTTCAAACGCTAGGGAACTGACTTGTGGGATCTGTTTTGAAACCTATCCTCGTGATAGGATGAATACTGCTGCTTGTGGTCATCCCTTTTGTAGCTCATGCTGGACAGGTTACATTAGCACGTCAATAAATGATGGTCCTGGATGTTTGATGTTGCGATGTCCCGATCCATCTTGTAGTGCTGCCGTTGGTCAAGACATGATCAATTTGTTGGCTTCTGATGAAGATCAGGAGAAGTATTCCCGTTACCTTCTAAGATCTTATATCGAAGACAATAGAAAGACCAAATGGTGCCCTGCTCCTGGTTGTGATTATGCTGTGGATTTTGTTATTGGTAGTGGGAACTATGATGTTTCTTGCAACTGCTCGTATAGCTTTTGCTGGAATTGTACCGAGGAAGCTCACCGTCCAGTGGACTGCGGCACCGTGGCAAAGTGGGTTTTGAAGAATAGTGCTGAGTCTGAAAACATGAATTGGATATTAGCTAATTCCAAGCCTTGTCCAAAGTGCAAGCGGCCAATTGAGAAAAACCAGGGTTGTATGCACATTACATGCACACCTCCTTGTAAATTCGAGTTTTGCTGGCTGTGCCTTGGTGCATGGTCGGATCATGGTGAGAGGACAGGTGGTTTCTATGCATGTAATCGTTATGAGACAGCAAAGCAAGAGGGAGCGTACGATGAGACTGAGAAAAGAAGAGAGATGGCTAAAAATTCTTTAGAGAGATACACTCATTATTATGAAAGATGGGCAACCAACCAGTCGTCGAGGCAAAAGGCTCTTGCAGATTTACAGCAAATGCAAGCTGTGCATATCGAGAAGCTGAGTGACAAACAATGCCAACCGGAGTCACAGCTCAAGTTTATAACGGAGGCCTGGCTACAGGTGGATCTTATGTTCCCTATTTGTACACTTGAAATCTGCTGCCTTCTTTTACTAAATTCAGCATTTATGCAGATAGTCGAGTGCAGGCGTGTGCTGAAGTGGACCTATGCCTATGGATATTACCTACCTGAGTTTGAACATGCAAAGAGACTGTTCTTTGAGTACCTGCAAGGTGAGGCTGAGTCGGGGTTAGAACGGCTTCATCAATGTGCAGAGAAGGAATTACAAGTGTACCTCAATGCAGAGGGACCCTCCAAAGACTTCAACGAGTTCCGTACAAAGCTGGCCGGACTGACCAGCGTCACCCGGAATTACTTTGAGAACCTGGTCAGTGCACTGGAGAATGGTCTATCAGATGTGGACTCCCATGGTGCCTGCAGCAGGACAGCAAGCTCGAAGAGTTTGGGAGGGAGCAGCAAGGGGAGAGGGGGCAGAGGTAAGGGAATTACCTCCCGGTCTGGTGGTCCCAGTCGAAGTCTGGACGACTCGGGCCACTGGTCTTGTGAACATTGCACTTACGCCAATACCAAGTCTGCTACCACTTGCCAAATGTGCCACCAGCACCGGTAA 1830 0.4683 MDSEDDMHDANDVESLDDFYSEETAMASDDGDGDYEFIDNDSDDSDDSTSHRPQQNYSILSEADIHQHQEEDITRISTVLSISRVSASILLRHYNWSVGKVHDAWFADEEIVRKAVGLLEKPVVQISNARELTCGICFETYPRDRMNTAACGHPFCSSCWTGYISTSINDGPGCLMLRCPDPSCSAAVGQDMINLLASDEDQEKYSRYLLRSYIEDNRKTKWCPAPGCDYAVDFVIGSGNYDVSCNCSYSFCWNCTEEAHRPVDCGTVAKWVLKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYETAKQEGAYDETEKRREMAKNSLERYTHYYERWATNQSSRQKALADLQQMQAVHIEKLSDKQCQPESQLKFITEAWLQVDLMFPICTLEICCLLLLNSAFMQIVECRRVLKWTYAYGYYLPEFEHAKRLFFEYLQGEAESGLERLHQCAEKELQVYLNAEGPSKDFNEFRTKLAGLTSVTRNYFENLVSALENGLSDVDSHGACSRTASSKSLGGSSKGRGGRGKGITSRSGGPSRSLDDSGHWSCEHCTYANTKSATTCQMCHQHR* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00185 609 CDD BRcat_RBR_ANKIB1 210 274 - -
Eupl07g00185 609 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 55 455 IPR031127 GO:0004842|GO:0016567
Eupl07g00185 609 ProSitePatterns Zinc finger RanBP2-type signature. 586 605 IPR001876 -
Eupl07g00185 609 SMART ibrneu5 269 339 IPR002867 GO:0008270
Eupl07g00185 609 SMART ibrneu5 203 265 IPR002867 GO:0008270
Eupl07g00185 609 CDD Rcat_RBR_ARI7-like 288 342 - -
Eupl07g00185 609 Gene3D - 580 609 - -
Eupl07g00185 609 ProSiteProfiles Zinc finger RING-type profile. 134 178 IPR001841 -
Eupl07g00185 609 ProSiteProfiles TRIAD supradomain profile. 130 343 IPR044066 -
Eupl07g00185 609 MobiDBLite consensus disorder prediction 24 54 - -
Eupl07g00185 609 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 215 IPR013083 -
Eupl07g00185 609 Pfam IBR domain, a half RING-finger domain 203 265 IPR002867 GO:0008270
Eupl07g00185 609 Pfam IBR domain, a half RING-finger domain 282 330 IPR002867 GO:0008270
Eupl07g00185 609 SUPERFAMILY RING/U-box 284 332 - -
Eupl07g00185 609 SUPERFAMILY RING/U-box 203 272 - -
Eupl07g00185 609 SUPERFAMILY Ran binding protein zinc finger-like 582 609 IPR036443 -
Eupl07g00185 609 SUPERFAMILY RING/U-box 130 215 - -
Eupl07g00185 609 SMART zf_4 584 608 IPR001876 -
Eupl07g00185 609 MobiDBLite consensus disorder prediction 24 43 - -
Eupl07g00185 609 MobiDBLite consensus disorder prediction 547 584 - -
Eupl07g00185 609 CDD RING-HC_ARI6-like 131 192 - -
Eupl07g00185 609 Gene3D - 261 424 - -
Eupl07g00185 609 Gene3D - 428 540 - -
Eupl07g00185 609 ProSiteProfiles Zinc finger RanBP2 type profile. 582 609 IPR001876 -
Eupl07g00185 609 FunFam RBR-type E3 ubiquitin transferase 128 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g00185 Eupl-Chr7 4158033 4177709 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00185 13 609 ARIADNE family AT1G65430 71.973 0.0 880
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g00185 K11968 - nnu:104605183 1060.83