Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00144 ATGGTTGACGATTTCATGGTCTGTGTTGATCGGATTATAGCTTCTGCTTGCTTTCAATCTGTTAATGAAGGAGTAGAGAGGACGGGGAGAGGTGAAGTGGCGGAGAATTTCTCTGTTCCTGTGAAAAGCAACGGTGAGGGTTGCTCGAAGAAAGCAGAGAAGAAAGGAGGGGAGATGGTTGAGTGTAGGATTTGTCAGGAGGAAGATGAAGAGCATGAAATGGAAGCTCCATGCGCTTGCAATGGCACTTTGAAGTTTGCTCATAGGAAGTGCATTCAGAGATGGTGCAACAAGAAAGGCGATATCACCTGTGAAATCTGCAATCAGGTCTTTGCACCGAATTATTCCCTTCCACCAGCCATAGTTCATCCTGATGGTATGACAATTGATATCAGACAAACATGGGGCCCACGGATCGATCTTCGTGATCCACATTTTTTGGCTCTAGCTGCTGCAGAGGATCAGCTGCTGCATTCAGGCTATGACGATTATGCCATTGCAAACACTGGCGGGGTTTCTTGTTTCCGCTCAGTTGCTCTCATCTTTTTGTTAATCTCTGCAGTTGATGCTAGTCCTACTTGTGCGCCACGCTTTAATGGTCACAAGGGATTCCGGGATGGTGCAGGAGACATCAATCTTTTTCAATGTTTCTCTTCTTCAGTTTGCCGGCTTTCTCCTCCCATGCTACGTGATGGCCCGTTCTTGGTACATTATACAGAGCCGAAGGAGGAGGCAGGGTTAAGAATCCATTGA 753 0.4675 MVDDFMVCVDRIIASACFQSVNEGVERTGRGEVAENFSVPVKSNGEGCSKKAEKKGGEMVECRICQEEDEEHEMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQVFAPNYSLPPAIVHPDGMTIDIRQTWGPRIDLRDPHFLALAAAEDQLLHSGYDDYAIANTGGVSCFRSVALIFLLISAVDASPTCAPRFNGHKGFRDGAGDINLFQCFSSSVCRLSPPMLRDGPFLVHYTEPKEEAGLRIH* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00144 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 117 IPR013083 -
Eupl07g00144 250 SUPERFAMILY RING/U-box 59 111 - -
Eupl07g00144 250 SMART ringv_2 61 108 IPR011016 GO:0008270
Eupl07g00144 250 Pfam RING-variant domain 62 107 IPR011016 GO:0008270
Eupl07g00144 250 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 186 IPR033275 -
Eupl07g00144 250 Pfam Protein of unknown function (DUF3675) 113 185 IPR022143 -
Eupl07g00144 250 ProSiteProfiles Zinc finger RING-CH-type profile. 54 114 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g00144 Eupl-Chr7 3434152 3447002 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00144 57 115 C3H Transcription Factor Family AT2G22120 40.678 5.35e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g00144 - - nnu:104605219 295.049