Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00116 ATGGGGAGAAGAAAGATCGAGATAAAGAAGTTAGAGGACAAAGCAAAAAAGAACGTAACCTTCTCAAAGCGACGCAAGGGCCTCTTCAAGAAAGCCGCAGACACTTGCAAAATGTACGATGCAGAGATCGCGATCATTGTTTTCTCACCTGCCGGACATCCTTTTACCTTTGGCCATTCTTCTGTCGATACCGTCATTGATCGTTACCTTGATCCAGTAGTGAAAAAACAAGAACTACAAGAACACAAGTCGTCTGTCAATTGGTGGGAATCGATCAATGTCGATCAGTATGATTCTTTGGAGGAGCTAGAGAGGTTACAGAGTGAATTGGAGAAGCTAAGAGAGAAGGCATTGAAGCGTATGGAGGTTGATGCTCTGAACGTGGACGATTATGAAGTCGATGATGTTTCTTTGATTCTCTGCAATGACAGCACAGGTGCATGTATAGGTGATCATGATGAAGGAGGATCATCTTCGACTTCAATAATGAGTTCATCATCATCATCATCAAATAATGAAGAAGATGTTTTGAATTATTTTTATTTGGATAACGTATTTCCTTCTCTCGATTCTTGTTTTATCGGCGACGAAAGAGGATCATCTTCGACTTCAATCGCGAGTTCATCATCGAACAATGAAGAAGATGTTTTGAATTATTTTTCTTTGGACGACGTATTTCCTTCTCTCGATTCTTGTTTTTTCCGTGATGGAGGAGGATCATCTTCGACTACTTCAATCATGAGTTCATCATCGGAGGGCGGAGAAGATGTTTTGAATTATTGGAAAGCATTTTTGTAA 798 0.4023 MGRRKIEIKKLEDKAKKNVTFSKRRKGLFKKAADTCKMYDAEIAIIVFSPAGHPFTFGHSSVDTVIDRYLDPVVKKQELQEHKSSVNWWESINVDQYDSLEELERLQSELEKLREKALKRMEVDALNVDDYEVDDVSLILCNDSTGACIGDHDEGGSSSTSIMSSSSSSSNNEEDVLNYFYLDNVFPSLDSCFIGDERGSSSTSIASSSSNNEEDVLNYFSLDDVFPSLDSCFFRDGGGSSSTTSIMSSSSEGGEDVLNYWKAFL* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00116 265 MobiDBLite consensus disorder prediction 152 171 - -
Eupl07g00116 265 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Eupl07g00116 265 Coils Coil 96 123 - -
Eupl07g00116 265 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Eupl07g00116 265 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Eupl07g00116 265 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Eupl07g00116 265 PANTHER MADS BOX PROTEIN 3 119 - -
Eupl07g00116 265 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Eupl07g00116 265 MobiDBLite consensus disorder prediction 154 171 - -
Eupl07g00116 265 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Eupl07g00116 265 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Eupl07g00116 265 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g00116 Eupl-Chr7 2817609 2818877 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00116 1 121 Type I MADS-box Gene Family AT2G24840 33.951 3.54e-24 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Eupl07g00116 SRF-TF 3.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g00116 - - ming:122069515 109.383