Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00112 ATGCCGCATCCGAACAAATCGAACATGACTACGGAGAAAAATCCTAGGCAGCCGATCCATGGCGGAAAGGAGACGGAAGAAGACGACGGAGCACCTACGCACAATCTGTGGATCGGAAACCTCTCCAACGACACTACCGATTCGGATCTGATGGATTTATTCGCCAAGTTCGGTGCGCTTGATAGTGTCACCACGTACTCGTCGAGGAACTTCGCGTTCATCTACTTTAAGCACCTCGAAGATGCGCGTGCCGCCAAGGATGCTCTCCAGGGTACTGTCCTATGTGGCAACCCGATCAAGATCGAGTTCGCTCGACCGGCTAAACCCGGTAAGCATTTGTGGGTAGGTGGAATTACATCATCTGTTACAAAGGAACAGCTCGAAGATGAATTTTTGAAGTTTGGAAAAATTGAGGACTTTAAATTCCTCAGGGACCGAAACTCGGCACTTGTTGACTATTATAGACTAGAAGATGCTGCTGCAGCTTTGAAAAATTTGAATGGAAAGCGTTTAGGCGGTGAGCAAATACGTGTGGATTTTTTGAGGTCACAACCTTCAAGAAGAGAAAACTGGTCCGACTTCCATGATTCAAGGGATGGACACTTCAACAATAGGAGGAGCATGGGACCTCCAGAGCCCTTATGGATGCCACCAGATGCAATGAGAAATTTTCCTGAGACATCCCCTTTTGGGCTTAAAAGGCATCAGCCATCTCAATCTTCTGGTGGACGGAGAGAAGGACAACCGAGCAATGTTTTGTGGATAGGGTATCCTCCTTCGGTTCAGATTGATGAGCAAATGCTTCATAATGCCATGATACTATTTGGTGAAATTGAAAGAATCAAAAGCTTCCCATCAAGGCATTATTCATTTGTAGAGTTCAGAAGTGTAGATGAAGCTCGACGTGCCAAAGAGGGCCTGCAAGGCCGTCTTTTTAACGATCCTAGGATACAGATACTGTTTTCAAGCAGCGATTTTGCACCCGGTAAGGATAGCCCTGGGATTTTTCCTGGAGTTAAAGGACCTAGACCAGATGTGTTCTTTAATGAACCTCCTTTTGGACCTGGACCTATGGACTTCTTTGGTCATAATCGACCAATGGCACCAAACAATTTTTCTGGTCCTCTTGCTCCTAATGGCATACCTGGACCAAATATGTTGATGAGGCCTTTTGGCCGTCAAGGTGGTTTCGATCCACTTCTTTCGGGTCCAGATATGTTTAATGATTTGGCGGGGCTCCTTCAGAATTTTCCGGATGCTAGTCCTAACAATCCAATGGGTCCAAATTGGAGAAGGCTGTCTCCTCCTGCACCTGGCATGCTTCCTTCTCCTGCATCGGGTATGCGGCCACCAATCAGGCCCACGTCTGGTACATTGGATGGATTTGACACGAATCCATTTCAAAGGGAATCCAAGAGGTCAAGGTTTGATGGTCCTTCACCCATTGATGATTCTTCCTTTCCTTCAAGAAAGATGGATAATCAGGGCATTGGGGGAGACCAACCATATGGGTTTGGACCACTTGCAAATACTCAAGGTCAGGGTCGCCACAGTCCAGTAGGTGGCCAGGGCCTTCCTGATAGTGATCACTGTTGGCGTGGCGTTATTGCTAAAGGTGGAACTCCTGTTTGTCATGCTCGGTGTGTGCCCATAGGAAGGGGGATAGACTCGCAGCTTCCTGAAATCGTGAATTGCTCAGCAAGAACGGGATTGGATATGCTCACGAAACACTTCGCAGAAGCCAGCGGTTTTGAGATTGTTTTCTTCTTACCAGACAGTGAAGATGATTTTGCTTCCTACACTGAATTTCTCCGTTACCTGGGTGCAAAGAATCGTGCGGGTGTTGCAAAGTTTGATGATGGGACCACATTATTTTTGGTGCCTCCATCAGATTTTTTAACCAAGGTTTTGAATGTCTCAGGTCCCGAACGTCTTTATGGCGTGGTTCTTAAGTTGCCACTGCAAATGCCAAGTAGTGCATCCATTCAACAACAACCCATCCCTCCACGTCCTACGCAATATATTGACAGACAGCAGCTCCCCCCTTCGCAAACTGATTATAATTTACTTCCTCAGAAGGAGGACCAAGTTTTGCAAATGGATTATAATAGGGTATTGCATGAGGATGTGATGCCTCATCCCCCAAAACCGCTTTTACCACCTACTGCAGAGTCCACTTCAATGCAGTCTGCTCCCCAAGATTATGCAGGTAATCCTGCATCAATGCCTCAAGTTGGAGCGTCTTTAACACCTGAGCTTATTGCCACCCTAGCTGCTTTACTACCTACCAGCATGCAGTCTTCAGCTTCAACCAGTGCCCAATTGCCATTAGGCTCTTCTGCCCTAAGGATGACCTCGTTTCCTGCTTCTGTAACGCCAGATAAAGTAATATCATCACAGGGATGGAAACAAGATCATCAAGCCACTACTTCTGGCACTCTCCATCATTCAAGAGAAGAGCAAACAGTTCATCCGTCCCAACAATTAGGACATCAATTTAATACTCAGGCACCATTTTTGTCTCAATTCCCAGCTTATGCGAATGTCACAAATGGTCCTGACCACTCTGCACAAGCCATCTTTGGCAGCTCACAAATCCAAGACCCTTCTCTGAACATGTCACAACAGGGTGCTATTTCTTCTCGAGCGTCAAATAACTTTTTGATCCCGTCTCAGGGTGGACAGTTTACAGTCCCCCATCAAGCCAACCAACAGTTTCAGCTTGATTCTTCTCACAATTCTCAGAAGAACTATGGGATGGTACATGGTGCAGATACTACCGGGTTATTCCGATCACCAGTTTTTCAGCAACCTAAGCCCCCTGTTACCTCGTCTACTCAGGTTCAAGGCACAAATTTATCCCAGCCACAACTAGGCATGCCTTCTGTAACTGACAGAGTGAATACAGAGTTTCCTAATCAGGTGCAACAACTGCAATCTGCACTCTCAGGCACCGGTCAGGGTGCAGCGGAGGGTGAGGCAGATAAGAACCAACGGTACCAATCGACTCTACAGTTTGCTGCCAGCTTACTTCTCCAGATACAACAGCAACAGCAGCAAGCAAATGCTCACACGGTTCAAGGCTCTGGCAATCATCAATGA 3102 0.4681 MPHPNKSNMTTEKNPRQPIHGGKETEEDDGAPTHNLWIGNLSNDTTDSDLMDLFAKFGALDSVTTYSSRNFAFIYFKHLEDARAAKDALQGTVLCGNPIKIEFARPAKPGKHLWVGGITSSVTKEQLEDEFLKFGKIEDFKFLRDRNSALVDYYRLEDAAAALKNLNGKRLGGEQIRVDFLRSQPSRRENWSDFHDSRDGHFNNRRSMGPPEPLWMPPDAMRNFPETSPFGLKRHQPSQSSGGRREGQPSNVLWIGYPPSVQIDEQMLHNAMILFGEIERIKSFPSRHYSFVEFRSVDEARRAKEGLQGRLFNDPRIQILFSSSDFAPGKDSPGIFPGVKGPRPDVFFNEPPFGPGPMDFFGHNRPMAPNNFSGPLAPNGIPGPNMLMRPFGRQGGFDPLLSGPDMFNDLAGLLQNFPDASPNNPMGPNWRRLSPPAPGMLPSPASGMRPPIRPTSGTLDGFDTNPFQRESKRSRFDGPSPIDDSSFPSRKMDNQGIGGDQPYGFGPLANTQGQGRHSPVGGQGLPDSDHCWRGVIAKGGTPVCHARCVPIGRGIDSQLPEIVNCSARTGLDMLTKHFAEASGFEIVFFLPDSEDDFASYTEFLRYLGAKNRAGVAKFDDGTTLFLVPPSDFLTKVLNVSGPERLYGVVLKLPLQMPSSASIQQQPIPPRPTQYIDRQQLPPSQTDYNLLPQKEDQVLQMDYNRVLHEDVMPHPPKPLLPPTAESTSMQSAPQDYAGNPASMPQVGASLTPELIATLAALLPTSMQSSASTSAQLPLGSSALRMTSFPASVTPDKVISSQGWKQDHQATTSGTLHHSREEQTVHPSQQLGHQFNTQAPFLSQFPAYANVTNGPDHSAQAIFGSSQIQDPSLNMSQQGAISSRASNNFLIPSQGGQFTVPHQANQQFQLDSSHNSQKNYGMVHGADTTGLFRSPVFQQPKPPVTSSTQVQGTNLSQPQLGMPSVTDRVNTEFPNQVQQLQSALSGTGQGAAEGEADKNQRYQSTLQFAASLLLQIQQQQQQANAHTVQGSGNHQ* 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00112 1033 MobiDBLite consensus disorder prediction 232 247 - -
Eupl07g00112 1033 CDD RRM_SF 113 179 - -
Eupl07g00112 1033 MobiDBLite consensus disorder prediction 1 15 - -
Eupl07g00112 1033 MobiDBLite consensus disorder prediction 17 31 - -
Eupl07g00112 1033 MobiDBLite consensus disorder prediction 660 686 - -
Eupl07g00112 1033 PANTHER RNA RECOGNITION MOTIF-CONTAINING 16 104 - -
Eupl07g00112 1033 FunFam flowering time control protein FPA 244 337 - -
Eupl07g00112 1033 FunFam Flowering time control protein FPA 26 108 - -
Eupl07g00112 1033 CDD RRM_SF 36 102 - -
Eupl07g00112 1033 MobiDBLite consensus disorder prediction 189 205 - -
Eupl07g00112 1033 CDD SPOC_FPA-like 531 651 - -
Eupl07g00112 1033 SUPERFAMILY RNA-binding domain, RBD 237 324 IPR035979 GO:0003676
Eupl07g00112 1033 Gene3D - 237 328 IPR012677 -
Eupl07g00112 1033 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 106 IPR000504 GO:0003723
Eupl07g00112 1033 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 251 324 IPR000504 GO:0003723
Eupl07g00112 1033 Gene3D - 4 109 IPR012677 -
Eupl07g00112 1033 Gene3D - 110 210 IPR012677 -
Eupl07g00112 1033 SUPERFAMILY RNA-binding domain, RBD 108 206 IPR035979 GO:0003676
Eupl07g00112 1033 MobiDBLite consensus disorder prediction 1 37 - -
Eupl07g00112 1033 CDD RRM_SF 258 319 - -
Eupl07g00112 1033 MobiDBLite consensus disorder prediction 938 959 - -
Eupl07g00112 1033 MobiDBLite consensus disorder prediction 454 523 - -
Eupl07g00112 1033 Pfam SPOC domain 526 643 IPR012921 -
Eupl07g00112 1033 MobiDBLite consensus disorder prediction 799 826 - -
Eupl07g00112 1033 MobiDBLite consensus disorder prediction 799 816 - -
Eupl07g00112 1033 MobiDBLite consensus disorder prediction 709 744 - -
Eupl07g00112 1033 SMART rrm1_1 112 179 IPR000504 GO:0003723
Eupl07g00112 1033 SMART rrm1_1 35 102 IPR000504 GO:0003723
Eupl07g00112 1033 SMART rrm1_1 252 320 IPR000504 GO:0003723
Eupl07g00112 1033 SUPERFAMILY RNA-binding domain, RBD 23 109 IPR035979 GO:0003676
Eupl07g00112 1033 MobiDBLite consensus disorder prediction 189 251 - -
Eupl07g00112 1033 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 183 IPR000504 GO:0003723
Eupl07g00112 1033 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 263 317 IPR000504 GO:0003723
Eupl07g00112 1033 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 100 IPR000504 GO:0003723
Eupl07g00112 1033 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 177 IPR000504 GO:0003723
Eupl07g00112 1033 MobiDBLite consensus disorder prediction 722 737 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g00112 Eupl-Chr7 2715284 2734733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00112 35 193 Eukaryotic Initiation Factors Gene Family AT2G23350 27.841 9.33e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g00112 - - nnu:104598258 1537.32