LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl07g00109	ATGGCGATCGACAGCTTTCAGAGACCAGTTTCAGGTAATCAAAACCCACCACAATCGAGCAAGCTTCGATGGGGAGAGCTCGAAGAAGACGACGGAGAGGATCTCGATTTCCTTCTCCCACCTCCCATGGTCATCGGACCAGACGAGAACGGCGTTAAGAAGGTTATCGAGTACAAGTTTAATGAAGAGGGCAACAAAGTTAAGATCACCACCACTACTCGGATTCGCAAACTCGCCAAGGCCCGACTCAGCAAACGCGCCGTCGAGCGTCGCTCGTGGCCTAAGTTCGGCGATGCCGTACACGAGGACGTCGGTAGCAGACTTACCATGGTTTCCACCGAAGAAATTCTCCTAGAAAGACCCAGGGCTCCTGGTAGCAAAGCAGAAGAAACCAAGGTTGCAGGAGACCCCTTGGCACAGCTCGGGAGAGGAGGTGCTGTTCTCATGGTGTGTAGGACTTGTGGTAAGAAGGGTGACCACTGGACATCGAAGTGCCCTTACAAGGATCTTGCCCAACAGTCTGAAGTCTTTGTTGACAAGCCAACTCCATCGGAAACCGCAGTGGGTGCTTCTGGCGCCGGCAAGGGAACCTATGTTCCTCCAGGCATGAGAGCAGGCGCAGAGAGAACTGGACAGGAGATGAGACGCAGGAATGAGGAGAACTCTGTTCGAGTCACCAACCTCTCGGAAGACACCCGTGAGCCTGACTTGCTTGAGCTCTTCCGTACTTTTGGTGCTGTGAGCCGTGTTTACGTCGCTGTCGACCAGAAGACTGGCATGAGCAGAGGCTTTGGTTTTGTCAACTTCGTAAACAAGGAAGATGCTGAGAGGGCTATTAACAAGCTCAATGGGTATGGTTACGACAATCTCATCCTCAGAGTTGAGTGGGCCACACCAAGAGCGAACTAG	909	0.5281	MAIDSFQRPVSGNQNPPQSSKLRWGELEEDDGEDLDFLLPPPMVIGPDENGVKKVIEYKFNEEGNKVKITTTTRIRKLAKARLSKRAVERRSWPKFGDAVHEDVGSRLTMVSTEEILLERPRAPGSKAEETKVAGDPLAQLGRGGAVLMVCRTCGKKGDHWTSKCPYKDLAQQSEVFVDKPTPSETAVGASGAGKGTYVPPGMRAGAERTGQEMRRRNEENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVNKEDAERAINKLNGYGYDNLILRVEWATPRAN*	303

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl07g00109	302	PIRSF	Transl_init_eIF-3_RNA-bind	14	302	IPR017334	GO:0003743\|GO:0005737\|GO:0005852
	Eupl07g00109	302	SMART	rrm1_1	222	295	IPR000504	GO:0003723
	Eupl07g00109	302	MobiDBLite	consensus disorder prediction	1	22	-	-
	Eupl07g00109	302	SUPERFAMILY	RNA-binding domain, RBD	219	301	IPR035979	GO:0003676
	Eupl07g00109	302	CDD	RRM_eIF3G_like	222	297	IPR034240	-
	Eupl07g00109	302	Hamap	Eukaryotic translation initiation factor 3 subunit G [EIF3G].	21	301	IPR017334	GO:0003743\|GO:0005737\|GO:0005852
	Eupl07g00109	302	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G	28	298	-	-
	Eupl07g00109	302	CDD	eIF3G	50	169	IPR024675	-
	Eupl07g00109	302	Pfam	Eukaryotic translation initiation factor 3 subunit G	44	170	IPR024675	-
	Eupl07g00109	302	Gene3D	-	192	302	IPR012677	-
	Eupl07g00109	302	MobiDBLite	consensus disorder prediction	7	21	-	-
	Eupl07g00109	302	FunFam	Eukaryotic translation initiation factor 3 subunit G	186	302	-	-
	Eupl07g00109	302	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	221	299	IPR000504	GO:0003723
	Eupl07g00109	302	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	223	289	IPR000504	GO:0003723
	Eupl07g00109	302	MobiDBLite	consensus disorder prediction	183	204	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl07g00109	Eupl-Chr7	2690958	2699716	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl07g00109	1	300	Eukaryotic Initiation Factors Gene Family	AT3G11400	67.069	1.11e-157	441

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl07g00109	K03248		-	ming:122091529	508.449