Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01871 ATGAGCATGGTTCAAAGTTCCAGACCATCAGGTGTGATGGAGATCTCATTGTTAAAGGCTTTACTTGACAATGTCTCTCGGTTCAACCACTTATCTTCCTGTAACAACGTAAAATCAGAACCAGTTCAGAAGTATTACCAGAAGATAGATGAGATACTGAAGCTGTTGAAGCCGATACTTGATGCAATTGTTGACTCACAGATAGCTTTAGATGAACAGCTTAATAAGGCATTCGAAGAACTGGATGGGCTTGTTAATGAAGCTAGGGAGCTTGTTGAAAGTTGGCATCCGATGACGAGTAAAGTTTATTTTGTTTTGCAAATCGAATCATTAATAGCAAGGATTCAGGCTTCCTGCCTGGAGGTTTTCCAGCTACTGAACTCTTTGAAGCAATATCTACCTGCTGATTTGAATGCAATATCTGTTGAGCTCTGTACACAGAAACTTCGTTGTATTGGGTATGAGCAAACATCAACTGTCATCAAAGAAGCTATAAGAGATCAAGTGGATAATGCCATGCCCAGTTCGGAGAGTCTGGTGAAGATTGCAGATTCCCTGAGTTTGACATCAAACCAAGAATTGCTAATGGAGGCTGTGGCCCTTGAAAAGGTGAAGGTGCAGGACGAGCAAGTTGAAAAGGATGGAGAGGCTGATTACATTGACCACATGATTGCTCTTGTCACCCACATGCATGACCGCCTTGTTAATATAAAACAGTCCCAGAGCACTAATGCAGTCCCAATCCCTGCTGATTTCTGCTGCCCTCTCTCCCTTGAGCTGATGACGGATCCGGTGATAGTGGCATCGGGACAAACTTATGAGCGGGCTTTCATCAGGAAATGGCTCGATCTTGGTCTCACAGTTTGCCCTAAAACCCGTCAGACTCTATCTCACACAAATCTAATCCCTAATTACACTGTCAAGGCACTAATTGCAAACTGGTGTGAGTCGAACTATGTGAAGATTCCTGATCCCGTGAAATCTATGAGTTTAAACCATCCCTCAGCTCTTCTTGCCCATGCAGATGCTGGTGCCATAGACTCACATATTCTTCCTCATTCTGGTCATGCTCCCAGCAGGACCAACCATCCAAGGTTGCTTGAGTCAACCACTAGGTCTATGAGTTCACCACATAAGAGCTTATCCTCGTCTAATGGAACCCACCTAGAGGGAACTTCTCCTTCACATCCGCGTTCAGCCTCAGAGGGTGCCTTGGGTAATGGGGTTGGAAATGGTGTTGCGTTGGATGTTGGTAGATTATTGTTAGTGAATTCTGAAGACAGGGAGGCTAGCTCGGAAGAGAGAAATTTGAGTTTGGGTGGCCAATCCTTGAAGCCGTCAAGAAAAGAATTTTCTGTAGCTAGTGGAGTTGATGAACAGTTTCAGGGCCACAGTCGAAATGCTTCAGCCTCGAGCACGGTTTCCAATGCAGATCTCCAAGGAACACCAGGAGATGTGAATGAGGTCTCACGGGTGTCCAGCGATCTGGCACACTACAGCAGCGATGCTTCAGGCGAAGTTACGTCAGAGCCTCTGGCTTCAGCTTCCTTGGCCCCACATAGAGAAAGCGAGTTCCCACCCCGATTGGCGGAGACACGGTCTAGAAGCCAAACCATCTGGCGCCGGCCAACTGAGAGATTTGTCCCGAGGATAGTTTCTTCTCTGGCTATTGACACGAGAGCGGATCTTTTGGGCATTGAAACCCAAGTTCGGAAGTTGGTCGAGGACTTGAAAAGTACTTCGGTTGATGTGCAAAGAGCTGCCACGGCTGAACTCCGCCTCCTCGCTAAGCATAACATGGATAATAGGATTATAATCGCTAACTGCGGGGCCATAAACTTGTTGGTCGGTTTGCTTCGTTCAACGGACATGAAGACCCAAGAGAATGCTGTCACAGCGCTTCTCAACTTATCAATAAATGATAACAACAAATCTGCAATTGCAAATGCTGAGGCTATTGAACCCCTCATTCTTGTTCTTGAGATGGGGAGCCCTGAGGCGAAGGAGAACTCGGCTGCAACCCTTTTTAGCCTCTCAGTTATTGAGGAGAACAAGGTCAGGATTGGGCGATCTGGGGCTATCAAGCCTCTGGTAGAGTTATTGGGCAATGGGACTCCTCGGGGGAAGAAAGATGCAGCGACGGCTTTGTTTAATTTGTCTATATTTCATGAGAACAAGGCCCGAATTGTGCAGGCTGGTGCTGTGAGGTACCTTGTTGAGCTAATGGACCCAGCAGCTGGGATGGTTGATAAGGCGGTTGCTGTTTTGGCTAACCTTGCGACAATAAATGAAGGGCGGAGTGCAATCGGTCAGGAGGGAGGGATCCCTGTTCTTGTTGAGGTTGTTGAATTGGGTTCCGCAAGGGGGAAGGAGAATGCAGCTGCAGCCCTGCTACAACTTTGCACAAATAGTAATAGATTCTGTAGTATGGTTCTCCAAGAAGGAGCTGTCCCGCCATTGGTGGCACTGTCACAGTCGGGCACACCACGAGCTAAAGAAAAGGCACAGGCGCTTCTTAGTCACTTCAGAAACCAGCGACATGGAAATGCTGGGAGGGGCTGA 2562 0.4731 MSMVQSSRPSGVMEISLLKALLDNVSRFNHLSSCNNVKSEPVQKYYQKIDEILKLLKPILDAIVDSQIALDEQLNKAFEELDGLVNEARELVESWHPMTSKVYFVLQIESLIARIQASCLEVFQLLNSLKQYLPADLNAISVELCTQKLRCIGYEQTSTVIKEAIRDQVDNAMPSSESLVKIADSLSLTSNQELLMEAVALEKVKVQDEQVEKDGEADYIDHMIALVTHMHDRLVNIKQSQSTNAVPIPADFCCPLSLELMTDPVIVASGQTYERAFIRKWLDLGLTVCPKTRQTLSHTNLIPNYTVKALIANWCESNYVKIPDPVKSMSLNHPSALLAHADAGAIDSHILPHSGHAPSRTNHPRLLESTTRSMSSPHKSLSSSNGTHLEGTSPSHPRSASEGALGNGVGNGVALDVGRLLLVNSEDREASSEERNLSLGGQSLKPSRKEFSVASGVDEQFQGHSRNASASSTVSNADLQGTPGDVNEVSRVSSDLAHYSSDASGEVTSEPLASASLAPHRESEFPPRLAETRSRSQTIWRRPTERFVPRIVSSLAIDTRADLLGIETQVRKLVEDLKSTSVDVQRAATAELRLLAKHNMDNRIIIANCGAINLLVGLLRSTDMKTQENAVTALLNLSINDNNKSAIANAEAIEPLILVLEMGSPEAKENSAATLFSLSVIEENKVRIGRSGAIKPLVELLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVRYLVELMDPAAGMVDKAVAVLANLATINEGRSAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTNSNRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSHFRNQRHGNAGRG* 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01871 853 SMART arm_5 553 597 IPR000225 GO:0005515
Eupl06g01871 853 SMART arm_5 681 721 IPR000225 GO:0005515
Eupl06g01871 853 SMART arm_5 722 761 IPR000225 GO:0005515
Eupl06g01871 853 SMART arm_5 762 802 IPR000225 GO:0005515
Eupl06g01871 853 SMART arm_5 599 639 IPR000225 GO:0005515
Eupl06g01871 853 SMART arm_5 640 680 IPR000225 GO:0005515
Eupl06g01871 853 SMART Ubox_2 251 314 IPR003613 GO:0004842|GO:0016567
Eupl06g01871 853 ProSiteProfiles U-box domain profile. 247 321 IPR003613 GO:0004842|GO:0016567
Eupl06g01871 853 MobiDBLite consensus disorder prediction 427 446 - -
Eupl06g01871 853 Pfam U-box domain 248 318 IPR003613 GO:0004842|GO:0016567
Eupl06g01871 853 SUPERFAMILY ARM repeat 569 842 IPR016024 -
Eupl06g01871 853 MobiDBLite consensus disorder prediction 455 530 - -
Eupl06g01871 853 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 733 774 IPR000225 GO:0005515
Eupl06g01871 853 CDD RING-Ubox_PUB 249 301 IPR045210 -
Eupl06g01871 853 FunFam RING-type E3 ubiquitin transferase 247 322 - -
Eupl06g01871 853 MobiDBLite consensus disorder prediction 363 400 - -
Eupl06g01871 853 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 692 734 IPR000225 GO:0005515
Eupl06g01871 853 Coils Coil 74 94 - -
Eupl06g01871 853 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 321 IPR013083 -
Eupl06g01871 853 MobiDBLite consensus disorder prediction 458 511 - -
Eupl06g01871 853 MobiDBLite consensus disorder prediction 349 409 - -
Eupl06g01871 853 Gene3D - 551 849 IPR011989 -
Eupl06g01871 853 FunFam RING-type E3 ubiquitin transferase 554 848 - -
Eupl06g01871 853 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 610 652 IPR000225 GO:0005515
Eupl06g01871 853 SUPERFAMILY RING/U-box 237 325 - -
Eupl06g01871 853 PANTHER U BOX DOMAIN-CONTAINING 40 843 - -
Eupl06g01871 853 Pfam Armadillo/beta-catenin-like repeat 683 720 IPR000225 GO:0005515
Eupl06g01871 853 Pfam Armadillo/beta-catenin-like repeat 601 638 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01871 Eupl-Chr6 42926758 42954257 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01871 209 853 U-box Gene Family AT2G23140 65.432 0.0 777
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01871 - - ming:122093679 1282.7