LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl06g01864	ATGTCGTGGGATATAAGTCGAGAACCATGTAGCGGAGCTTCAATCGACGCAAGCAATATCGAGGACTCGGAATTCCATTCTGGGATTAAATGCAACTGTGCGTACGACAACGGAACTACTTGCCACATAACCCATCTGAGAGTATATGATCTGGATGCAACAGGGATAATTCCAGAGGAGCTCGGGAATTTGACTTATCTCACCTATTTAAAGGTGGATCAAAATTACTTAACAGGTCCCTTGCCTGCATTTATCGGCAATTTATCTGCGTTGCAATTCTTGTCTATTGGTACCAATGCATTATCGGGCCCCATCCCAGAGGAACTTGGACAGCTTCGAAATCTACAAGTACTGGCTTTTGGCTCAAATAATTTCAATGGGTCTCTTCCTCCGCAGCTTGGGAATTTAGTCAATCTCGAGCAGATTTACATGGACAATTCTGGATTAGGTGGAGAGATTCCTTCGACGTTTGCTAACCTACTAAACATGCAAATTATGTGGGCATCGAATAATCCCTTCACGGGCAAGATACCTGACTTCATCGGGAATTGGAGAAACCTTACCACTTTGAGATTTCAAGGGAATGCTTTTGAAGGTCCAATACCATCAAGCTTTTCTAATTTGACTACATTAACTGATCTGCGGATAAGTGACATGTTTAATGTGAGCTCATCGTTGGATTTTATTAAGGACATGAAGGATTTAAGCACCTTGGTTTTGAGAAATAATTTGATTTCCGGAAGTATTCCATCGGATATTGGAGAGTACGCAAATCTACAGATGATGGACTTCAGCTTCAACAATTTGACTGGGCAAATTCCAAGCTCTCTGTTCAATTTGAGTTCTCTCTCATACTTGTTTCTTGGAAACAATAGCTTATCCGGTACCCTCCCTTCCGAAAAACATTCAACACTTCTCAATATAGATGTGTCATACAATGAACTATCAGGAAGTTTTCCTTCTTGGGTGACCCATCAAAATTTAACCTTGAACTTGGTGGCCAACAACTTTATAAATGATAATTCGAATAACAGTGTTTTAGATTCAGGATTGAATTGTCTTCAACGAAATTTTCCATGCAATAGGGATTCTCCGCGATATTCCTCTTTTGCAATAAAGTGTGGTGGCTCAGAGAAGACATCATCTAGTGGAATACTTTTTGAGAGCGAAAATTTGGATCTAGGCCCAGCATCATATTATGTAACTGATACAAGAAGATGGGCAGTTAGCAACATCGGATTGTTTGGATCACTAAGATACTACGGCCTAGGCCTTGAGAATGGAATCTACAATGTAAATCTGCAATTTGCAGAGATACGTTATGCTAACGAAAGCTCACGCACTTGGCAGAGTCTTGGAAGGCGTGTTTTTGATATTTATCTACAGGGGAATCTGCAGTTAAAGGACTTTGATATAAGAAAGGAGGCAGGTGGGTTATCATTTAGAGCTGTTACGAAGGATTTCAAGGTTCAGGTGTCTGCAAACTTCCTTGAAATTCACCTCTTTTGGGCTGGAAAGGGAACATGTTGCATACCTGTACAAGGTTATTATGGACCATCAATTTCAGCCATTAGTGTTACTCCAGACTTCATCCCAACTGTTAGTGACCTTCCCCCAACCACTTCACCAAAGAAAAAGACCAGCTTGATTGTTGGTATTGCAATTGTTGTTGGGGTTGTTAGCATTATATCTATTTTCGTAGTTTATTATTTGAGAAAAAGGAAAAGGGCAGACAACAATGACGAAAAAGTGCTTCTAGAAATAGGTTCCAAGGCAAACACTTTCAGTTATGCTGAACTGAGAACTGCTACAGAAGACTTCAGTCTTGCAAATAAGCTAGGAGAGGGGGGTTTTGGACCTGTTTACAAGGGCATGCTTCTTGATGGAAGAGAAATAGGTGTGAAGAAACTCTCAATAGCATCTAACCAAGGAAAGAGTCAGTTTGTAACAGAGATTGCCACCATTTCTGCAGTGCAACATTGCAACCTTGTGAAATTGTATGGATGTTGCATCAAAGGAGATAATCGACTCCTGGTTTATGAGTATCTCGAAAATAAGAGCCTTGATCAGGCACTTTTCGGAAAGAGTGGTTTACATCTTGATTGGCCAACCCGCTATGATATATGCTTGGGGGCGGCAAGAGGTCTAGCTTATCTACATGAGGAGTCGAGCCCCAGGGTCATACACAGAGATGTCAAGTCTAGTAATATTCTGCTTGACACTGATCTAAACCCCAAAATTTCAGATTTTGGTTTGGCAAAGTTGTACGATGACAAGAAGACCCATATCAGCACCCGAGTTGCTGGGACAATTGGTTATCTTGCCCCGGAGTATGCGATGCGTGGGCATCTGACAGAAAAGGCTGATGTGTTTGGTTTTGGGGTCGTTGCTTTGGAGATCGTCAGTGGGCGACCAAATTCTGATTTAAGCTTAGATCAAGACAAGATATATCTTCTTGAATGGGCTTGGAATCTACATGGAAGTAATCGGGGATTGGAACTGGTCGATCCAACATTAACTAATTTTGACAAAGAAGAAGTTATTCGAATGATAGGAGTAGCTCTTTTGTGCACTCAGGCATCACCAATGCTGCGTCCACCCATGTCGCGGGTAGTGGCCACACTGACAGGAGACATAGAAGTAAGCACTATTGCATCAAGGCCTAGTTACTTAACAGATTGGCATTACATTGACACAAGCACCAGTGTGAGTGATGGAACTTCAGGATCCTTCCTGTCAAAAGCTACAACTAGCCAGCATGACACAGCAAACGAGTCACCAATTGTTGTCAGTCAGCCAATGCTCCATGAGATTATTGATGAAGGATGGTGA	2832	0.4174	MSWDISREPCSGASIDASNIEDSEFHSGIKCNCAYDNGTTCHITHLRVYDLDATGIIPEELGNLTYLTYLKVDQNYLTGPLPAFIGNLSALQFLSIGTNALSGPIPEELGQLRNLQVLAFGSNNFNGSLPPQLGNLVNLEQIYMDNSGLGGEIPSTFANLLNMQIMWASNNPFTGKIPDFIGNWRNLTTLRFQGNAFEGPIPSSFSNLTTLTDLRISDMFNVSSSLDFIKDMKDLSTLVLRNNLISGSIPSDIGEYANLQMMDFSFNNLTGQIPSSLFNLSSLSYLFLGNNSLSGTLPSEKHSTLLNIDVSYNELSGSFPSWVTHQNLTLNLVANNFINDNSNNSVLDSGLNCLQRNFPCNRDSPRYSSFAIKCGGSEKTSSSGILFESENLDLGPASYYVTDTRRWAVSNIGLFGSLRYYGLGLENGIYNVNLQFAEIRYANESSRTWQSLGRRVFDIYLQGNLQLKDFDIRKEAGGLSFRAVTKDFKVQVSANFLEIHLFWAGKGTCCIPVQGYYGPSISAISVTPDFIPTVSDLPPTTSPKKKTSLIVGIAIVVGVVSIISIFVVYYLRKRKRADNNDEKVLLEIGSKANTFSYAELRTATEDFSLANKLGEGGFGPVYKGMLLDGREIGVKKLSIASNQGKSQFVTEIATISAVQHCNLVKLYGCCIKGDNRLLVYEYLENKSLDQALFGKSGLHLDWPTRYDICLGAARGLAYLHEESSPRVIHRDVKSSNILLDTDLNPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFGFGVVALEIVSGRPNSDLSLDQDKIYLLEWAWNLHGSNRGLELVDPTLTNFDKEEVIRMIGVALLCTQASPMLRPPMSRVVATLTGDIEVSTIASRPSYLTDWHYIDTSTSVSDGTSGSFLSKATTSQHDTANESPIVVSQPMLHEIIDEGW*	944

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl06g01864	943	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	683	887	-	-
	Eupl06g01864	943	FunFam	Leucine-rich repeat receptor-like protein kinase	576	682	-	-
	Eupl06g01864	943	SUPERFAMILY	Protein kinase-like (PK-like)	587	875	IPR011009	-
	Eupl06g01864	943	Gene3D	Phosphorylase Kinase; domain 1	568	682	-	-
	Eupl06g01864	943	Gene3D	Ribonuclease Inhibitor	1	221	IPR032675	-
	Eupl06g01864	943	Gene3D	Ribonuclease Inhibitor	222	347	IPR032675	-
	Eupl06g01864	943	Gene3D	-	368	529	-	-
	Eupl06g01864	943	ProSiteProfiles	Protein kinase domain profile.	607	881	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl06g01864	943	SMART	serkin_6	607	864	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl06g01864	943	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	727	739	IPR008271	GO:0004672\|GO:0006468
	Eupl06g01864	943	Gene3D	Transferase(Phosphotransferase) domain 1	683	886	-	-
	Eupl06g01864	943	SUPERFAMILY	L domain-like	39	354	-	-
	Eupl06g01864	943	Pfam	Protein kinase domain	609	808	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl06g01864	943	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	222	345	-	-
	Eupl06g01864	943	FunFam	Os05g0263100 protein	1	221	-	-
	Eupl06g01864	943	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	2	906	-	-
	Eupl06g01864	943	CDD	STKc_IRAK	613	877	-	-
	Eupl06g01864	943	Pfam	Malectin domain	369	524	IPR021720	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl06g01864	Eupl-Chr6	42275949	42292189	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl06g01864	91	942	Receptor kinase-like Gene Family	AT1G56120	58.830	0.0	1035

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Eupl06g01864		Pkinase	7.4e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl06g01864	-		-	msin:131220903	1256.51