Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01848 ATGGAGGACCAAAACAGTATTAGTGATGGGTTTTTTGTCGATTTTGTTGTTGACGACAAGCCGGAAGAAGAGGAAGAAGAATTCCGCAGTTGTTGCACGGAGGAGGATGAATGGAGGGACACGGAGGAGTCTGTAAACGGAGGGTTGAAAGATGATCTTGATGAATTTTCCTTGAAGATGTTCTTCAAAGGTATATCAATAGCTGAGGCCGGGGATTCGAGTCCCGGATTTTCTGGAATTGGGGTGATTATGGAGAGATCCCCAGGAGTTCCAGTTATTCAAGTACAGAAAAAGCTAGATTTCTACATCGAGGAACCAGTGGCTGAGTATTTGGCTTTGATGGATGGTCTGGTAGAGGCTCTGGAGAATAATACTCTCCGGGTCTTTGCTTTTACGGATTCCGAGATTGTTTATGATCAGATTGCTCGGGAGGAGAGACTTGAAAATCCGCTTTTGATAGCGTTGAGGCAAAGGATTCTAGAACATGCCAGTAAATTAGACTCTTTTGTTCTGAAACTTGTTCCTAGTATTGATCTCGAGAGGCCATTGCAATTAGCACAGGTAGCAGTAGGCATTGTCTGTTTGTTTGCAGAGCGAGATGGATCAATTGAAGATTGTCCTATCTGCTGTGAGGAAAAGCCACCATCAATGATGATAACCATGAAATGTTCCCACAAATTTTGTTCTCTTTGTATGAGAACCTATGTGGATGGAAAATTACAGACCTCTCAAGTACCCATAAGATGCCCACAATTGAGATGTAAGTATTACATATCGGCTAGTGAGTGCAGATCCTTTCTTCCGGTCACCTGCTACAAGTCATTGGAGAGAGCTCTTGCAGAGGCCAATATTCTTAACTCGGAGAAAATCTACTGCCCATTTCCAAATTGTTCAATGCTGCTTAATCCTTGTCAGTTTTTGTCGACAAGGGCAAGCTCATCAAGTCAATCAGATACCAGCTGTGTTGAGTGTCCTGACTGTCAGAGGTTTATCTGTGTGGATTGTGGGGTACCGTGGCATTCTTCATTGAGTTGTGAGGAATATCAGAACCTGCCCATAGAGGAGAGGGATGCTGGGGACATCACTTTGCATCGCCTTGCACAAAATAAAAAGTGGAGACGCTGTCTGCAATGTCGAAGGATGATTGAGCTCACACAAGGCTGCTATCACATGACATGCTGGTGCGGACATGAGTTCTGCTATTCATGTGGTGCAGAATATACGGATGGGCAGCAGACCTGTCAGTGCGCCTTTTGGGATGAAGAGAGTTTCGAGAACCTAGTCACCCAATCTAACCATGACTCTGAACAGTGGAGATGGGATTCCTTCGATTCACTGCCCACAATTATGGATGCATACTCAGATCAAGAACGATCACAGTTGGCACTGATCCAGAGGTTTCTTGCTGGGGGATTTAGTCTGAGTGACCATCACCCTTATCAATCCCCACCCCCGTGTACAGATTCCTATGTTGACACCATAAAGGATCTCCACCAGCTTCCGTGGCTTGAGAGGTTTGTCTCTGTGATTAGCGACAACTACTATGAAGATTACATACAATGA 1563 0.4472 MEDQNSISDGFFVDFVVDDKPEEEEEEFRSCCTEEDEWRDTEESVNGGLKDDLDEFSLKMFFKGISIAEAGDSSPGFSGIGVIMERSPGVPVIQVQKKLDFYIEEPVAEYLALMDGLVEALENNTLRVFAFTDSEIVYDQIAREERLENPLLIALRQRILEHASKLDSFVLKLVPSIDLERPLQLAQVAVGIVCLFAERDGSIEDCPICCEEKPPSMMITMKCSHKFCSLCMRTYVDGKLQTSQVPIRCPQLRCKYYISASECRSFLPVTCYKSLERALAEANILNSEKIYCPFPNCSMLLNPCQFLSTRASSSSQSDTSCVECPDCQRFICVDCGVPWHSSLSCEEYQNLPIEERDAGDITLHRLAQNKKWRRCLQCRRMIELTQGCYHMTCWCGHEFCYSCGAEYTDGQQTCQCAFWDEESFENLVTQSNHDSEQWRWDSFDSLPTIMDAYSDQERSQLALIQRFLAGGFSLSDHHPYQSPPPCTDSYVDTIKDLHQLPWLERFVSVISDNYYEDYIQ* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01848 520 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 122 465 IPR031127 GO:0004842|GO:0016567
Eupl06g01848 520 FunFam RBR-type E3 ubiquitin transferase 343 468 - -
Eupl06g01848 520 FunFam RBR-type E3 ubiquitin transferase 58 192 - -
Eupl06g01848 520 Gene3D - 59 191 IPR036397 GO:0003676
Eupl06g01848 520 SUPERFAMILY RING/U-box 358 422 - -
Eupl06g01848 520 Gene3D - 343 467 - -
Eupl06g01848 520 Pfam Reverse transcriptase-like 74 175 IPR002156 GO:0003676|GO:0004523
Eupl06g01848 520 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 284 IPR013083 -
Eupl06g01848 520 SUPERFAMILY Ribonuclease H-like 72 175 IPR012337 -
Eupl06g01848 520 FunFam RBR-type E3 ubiquitin transferase 201 286 - -
Eupl06g01848 520 SMART ring_2 206 252 IPR001841 -
Eupl06g01848 520 SMART ring_2 375 416 IPR001841 -
Eupl06g01848 520 Pfam Zinc finger, C3HC4 type (RING finger) 206 250 IPR018957 GO:0046872
Eupl06g01848 520 MobiDBLite consensus disorder prediction 21 46 - -
Eupl06g01848 520 CDD Rcat_RBR_unk 371 407 - -
Eupl06g01848 520 ProSitePatterns Zinc finger RING-type signature. 223 232 IPR017907 -
Eupl06g01848 520 SUPERFAMILY RING/U-box 202 282 - -
Eupl06g01848 520 ProSiteProfiles TRIAD supradomain profile. 202 420 IPR044066 -
Eupl06g01848 520 ProSiteProfiles Zinc finger RING-type profile. 206 253 IPR001841 -
Eupl06g01848 520 Pfam IBR domain, a half RING-finger domain 366 414 IPR002867 GO:0008270
Eupl06g01848 520 Pfam IBR domain, a half RING-finger domain 285 345 IPR002867 GO:0008270
Eupl06g01848 520 MobiDBLite consensus disorder prediction 32 46 - -
Eupl06g01848 520 CDD BRcat_RBR_unk 287 348 - -
Eupl06g01848 520 SMART ibrneu5 355 414 IPR002867 GO:0008270
Eupl06g01848 520 SMART ibrneu5 273 345 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01848 Eupl-Chr6 40659043 40669965 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01848 33 405 C3H Transcription Factor Family AT2G19610 25.823 6.93e-31 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01848 - - nnu:104586523 879.396