Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01831 ATGAAAGGATGCGAGAGTTGTGGGATCTTCTTGATGGAAGGATGTACATATGGAACATCGTCATGTAAAGGATGCAGGGTCCAAGCATTGATCCTGTCACCTACGAGAGAACTCGCTGCACAGACTGAGAAAGTAATTTTGGCAGTTGGTGATTACATAAATATACAGGCCCATGCATGCATCGGAGGAAAAAGCGTCGGTGAGGATATAAGGAAACTAGAATATGGGGTCCATGTAGTATCTGGAACACCGGGCCGAGTCTGTGACATGATCAAGAGAAGAACATTACGCACCAGAGCTATCAAATTATTAGTCCTTGATGAATCTGATGAGATGCTGAGCAGAGGGTTCAAGGATCAAATTTATGATGTTTACAGATATCTTCCACCAGAGCTTCAGGTTGTTTTGATCTCTGCAACTCTTCCTCATGAAATATTGGAAATAACAAGCAAGTTTATGACAGATCCTGTCAGGATACTTGTGAAGCGTGATGAATTGACGCTGGAGGGAATCAAACAATTCTTTGTTGCTGTTGAAAGAGAAGAGTGGAAGTTTGATACTTTGTGCGATCTCTATGATACCCTTACCATCACCCAAGCTGTTATTTTCTGCAACACAAAGCGAAAGGTGGATTGGTTGACTGAGAAGATGCGTAGCTATAACTTCACCGTTTCTTCAATGCATGGAGACATGCCTCAGAAGGAGCGAGATGCGATAATGGCAGAGTTCAGGTCAGGAACAACCCATGTTCTGATCACAACAGATGTGTGGGCTCGAGGCCTTGATGTCCAACAGGCAAGTCTTTTGGTTTCTCTAGTGATCAATTATGACCTTCCAAACAACCGTGAGCTTTACATACATCGGATAGGCCGCTCTGGTCGTTTTGGACGCAAGGGCGTGGCAATTAACTTCGTCCGCAACGATGACATCAGGATTTTGAGAGACATAGAGCAGTACTACAGCACGCAGATTGATGAGATGCCAATGAATGTGGCCGATCTGATATGA 1008 0.4405 MKGCESCGIFLMEGCTYGTSSCKGCRVQALILSPTRELAAQTEKVILAVGDYINIQAHACIGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEITSKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRSYNFTVSSMHGDMPQKERDAIMAEFRSGTTHVLITTDVWARGLDVQQASLLVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDIRILRDIEQYYSTQIDEMPMNVADLI* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01831 335 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 26 317 - -
Eupl06g01831 335 Gene3D - 19 166 IPR027417 -
Eupl06g01831 335 SMART ultradead3 1 174 IPR014001 -
Eupl06g01831 335 Gene3D - 167 335 IPR027417 -
Eupl06g01831 335 Pfam DEAD/DEAH box helicase 25 145 IPR011545 GO:0003676|GO:0005524
Eupl06g01831 335 FunFam Eukaryotic initiation factor 4A-III 165 335 - -
Eupl06g01831 335 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 318 IPR027417 -
Eupl06g01831 335 CDD SF2_C_DEAD 171 305 - -
Eupl06g01831 335 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 28 159 IPR014001 -
Eupl06g01831 335 SMART helicmild6 211 296 IPR001650 -
Eupl06g01831 335 Pfam Helicase conserved C-terminal domain 184 296 IPR001650 -
Eupl06g01831 335 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 170 335 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01831 Eupl-Chr6 39139664 39171046 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01831 27 335 Eukaryotic Initiation Factors Gene Family AT3G19760 89.320 0.0 576
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01831 K13025 - nnu:104587558 590.497