Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01823 ATGGAAAACCATGCAAGAGGAAGAGGGGATTTTCCAAGAGGGAGAGGAAGAGGGGGAGGGAGAGGCGCTTCTCCAAGAGGGCGAGGGAGAGGGAGCTATCATCAAAATCATGGAGAATTCTCTAACCCTCAACCTAGCCCTAATCCTAACCCTAAACCTAACCCCAATTATCATGGGAACATGAGGTACAGACCGGTTTCCGGCCAGCGAGAATCGAATCCGGGTCAGTTTGCTGGATCCAGAATGCCGGATTCTAGCCAAGGGTCCACTGGTGCAGGGAGTTCGAGGGGTCCGGTCCCTGGTCGAGGAGTAACAGAGGTATATGTTCAGGTTGGCTCGCGAGCGTCCAACCAGGTTAACGATCCTCCGATTTCAGAGGTACTACAGTCACTAGAAATTTCCCAGTTGCCAAAATCACCACTGTTGGAAGGTAGTGGTAGAATTCCAATAAGAAGACCCGATAATGGTGGGAAATCTGTGGTACAATATCTCTGCCTTCTTGTCAATCATTTCCGCGTCAAGTTCAACCCCCAGCTAACCATACTCCACTATGACATAGACATTAAACCGGAGGTACCACCCAAGCATGGTGGAACTGTTGAGATATCTAAGTCAGAGATGCGTATGATCAAGGACAAATTATTCTCAGAGGACCCCGCACAGTTTCCTATGTTGAGGACTGCCTATGATGGGAATAAAAACATTTTTAGTGCTGTAGAACTGCCTACTGGGGAATTCCAAGTGGAAATGTCTAGGGGGGAGGGCCTCAAGACTCGTAAGTATACATTTACTATAAAGCTAGTAAAAGAGCTAGAGCTACAAAAGTTGGAGGCATACCTAAATGGGAACCTCCCATCGATCCCTCGAGAGATTTTACAGGGGATGGATTTGGTCATGAAAGAGAATCCCACTAGGCATCGGATCCCAATTGGTAAAAGCTTTTACTCCAAAGGATTCGACAATGAGGATGATCTCGGCTGGGGCATCATTGCTTCTAGAGGGTTTCAACACAGCCTGAAGCCTACATACCAAGGTTTAGCCTTATGTGTGGACTACTCAGTTTTGGCATTTTGGAAGCAAGTCCCAGTACTAGAGTTCCTTCATGAGAACTTGGGAATAAAGTTTGATGAGAGAAAATCTTTGGATAATCGGGAAAGGAAAAATGTTGAGCAGGCCTTAAAAGGATTGAGAGTGACGGTGAATCACAGGACAACCAAGCAAAAGTATATGATCGTGGGATTGACAAGATCCGTCTCAAATGATCTAAAGTTCACAGTCGACAATCCAGAGGGTAAGAATCATCAAAAGGAGGTGGGACTTGTGGAGTACTTTAGAGACAAATATAAGAAGGAGATAAGATACAAGTATATTCCTTGCTTGGATTTCAGCAAGAGTGGGAGGATGAACTATGTACCTATGGAGTTCTGTGTGTTGGTTGAAGGACAGAGGTATCCAAAGGAGAATTTGGAGAGGAATGCAGCTCAGTATTTTAAGAACATTTGTTTGGCTAAGCCATGGACAAGAATGGGGGTGATATGCGACATGGTCCGAGCAAGGGATGGGCCTCGTGGAGGAGAAATCGCAGAGAATTTTGAAATTGAAGTCAGCACGGAGATGACAGAAGTGACTGGCCGTGTTATCAAACCACCTGATTTGAAACTTGGTGATGCCAATGGCAGGTCAAGTAAATTCACACTCGATAGGGATGACTGTCAATGGAACCTCATTGACAGATCTGTTTTGGAAGGGAAGCAAATTGAACGGTGGGCAATCCTTGATTTCAGTTCATCTGATCGGTACATAAGACTAAACCCTGATCAATTCATTCAACAGCTTGTTGGTCGGTGCTCCAAACTCAGGATACACATGAAGAAGCCTCTATTTTGTCAACCATCTAGTATGGTTGTGCTCTCAAACGCCAATGAGCTGCGTGATCTCCTCAAGCATGTTAACCAACGTGCTGATAAGATTGCTGGGGGCTGGTTGCAGATTCTCATCTGTGTGATGACAAAGAAAGATCCAGGCTACAATAACCTCAAGTGGATCAGTGAGACTGAGACTGGTATCTTGACGCAATGCTGTCTGGCCCACCACGCCAACGCGGGCAAGGACCAGTACCTCGCAAACCTTGCTCTCAAGATCAATGCTAAGCTAGGGGGCAGCAACATGGAGCTCTTCGATAGGCTTCCCCGCCTTGAGGGCGACGGCCATGTAATGTTTATTGGGGCTGACGTCAATCATCCTGGCTCCCGGAACACATCGAGCCCCTCAATTGCAGCTGTTGTAGCAAGTGTAAATTGGCCTGCTGCAAATCGGTATGTAGCACGAATCCGTCCACAGGACCATCGGATTGAGAAGATCCAAAATTTTGGGGAAATGTGTTTTGAGCTTCTCAATGCATATGCCCGGCTCAACAAAGTCAAGCCAGAGAAGATTGTGGTTTTTCGTGATGGGGTCAGTGAGAGCCAGTTTGACATGGTTCTCAACGAGGAGTTAACGGACCTTAAAAAAGCAGTCGAAGTAGATGGATACTCACCGACAATCACAATTGTGGTAGCACAGAAGCGGCACCAAACCCGCCTCTTCCCCAAGGATAGGAAGCAAGGTGCCCAAACTGGAAACGTATTTCCCGGGACGGTCGTCGATACAAAAATTGTACATCCTCAGGAATTCGATTTCTATCTCTGTAGCCACCATGGTATCCTAGGAACAAGCAAGCCAACGCACTACAACGTCCTTTATGATGAGCATGGGTTTACATCTGACGAGTTGCAGAGGGTCATATACAACCTGTGCTACACTTTTGCTCGCTGCACCAAACCAGTCTCATTGGTTCCACCGGTGTACTACGCTGACCTTGTCGCATATCGGGGGCGGCAGTACTATGAAGCATTGATGGATTCACATTCCCCTGCTTCGGCGGTATCTTCATCTTCTTTTACGTTGTCTCCGTCATCGTTGTCATCTGCATCATCTTCATCATTATTTGAGCATAGTAGGTTCTTTAAGCTGCACAGCAATCTTGAAAACCATATGTTCTTCTGCTGA 3048 0.4649 MENHARGRGDFPRGRGRGGGRGASPRGRGRGSYHQNHGEFSNPQPSPNPNPKPNPNYHGNMRYRPVSGQRESNPGQFAGSRMPDSSQGSTGAGSSRGPVPGRGVTEVYVQVGSRASNQVNDPPISEVLQSLEISQLPKSPLLEGSGRIPIRRPDNGGKSVVQYLCLLVNHFRVKFNPQLTILHYDIDIKPEVPPKHGGTVEISKSEMRMIKDKLFSEDPAQFPMLRTAYDGNKNIFSAVELPTGEFQVEMSRGEGLKTRKYTFTIKLVKELELQKLEAYLNGNLPSIPREILQGMDLVMKENPTRHRIPIGKSFYSKGFDNEDDLGWGIIASRGFQHSLKPTYQGLALCVDYSVLAFWKQVPVLEFLHENLGIKFDERKSLDNRERKNVEQALKGLRVTVNHRTTKQKYMIVGLTRSVSNDLKFTVDNPEGKNHQKEVGLVEYFRDKYKKEIRYKYIPCLDFSKSGRMNYVPMEFCVLVEGQRYPKENLERNAAQYFKNICLAKPWTRMGVICDMVRARDGPRGGEIAENFEIEVSTEMTEVTGRVIKPPDLKLGDANGRSSKFTLDRDDCQWNLIDRSVLEGKQIERWAILDFSSSDRYIRLNPDQFIQQLVGRCSKLRIHMKKPLFCQPSSMVVLSNANELRDLLKHVNQRADKIAGGWLQILICVMTKKDPGYNNLKWISETETGILTQCCLAHHANAGKDQYLANLALKINAKLGGSNMELFDRLPRLEGDGHVMFIGADVNHPGSRNTSSPSIAAVVASVNWPAANRYVARIRPQDHRIEKIQNFGEMCFELLNAYARLNKVKPEKIVVFRDGVSESQFDMVLNEELTDLKKAVEVDGYSPTITIVVAQKRHQTRLFPKDRKQGAQTGNVFPGTVVDTKIVHPQEFDFYLCSHHGILGTSKPTHYNVLYDEHGFTSDELQRVIYNLCYTFARCTKPVSLVPPVYYADLVAYRGRQYYEALMDSHSPASAVSSSSFTLSPSSLSSASSSSLFEHSRFFKLHSNLENHMFFC* 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01823 1015 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 160 967 - -
Eupl06g01823 1015 SMART PAZ_2_a_3 361 503 IPR003100 GO:0005515
Eupl06g01823 1015 MobiDBLite consensus disorder prediction 1 15 - -
Eupl06g01823 1015 Gene3D - 734 1015 IPR036397 GO:0003676
Eupl06g01823 1015 SMART Piwi_a_2 664 963 IPR003165 GO:0003676
Eupl06g01823 1015 Gene3D - 546 726 - -
Eupl06g01823 1015 MobiDBLite consensus disorder prediction 1 103 - -
Eupl06g01823 1015 SUPERFAMILY Ribonuclease H-like 655 963 IPR012337 -
Eupl06g01823 1015 SMART DUF1785_2 308 360 IPR014811 -
Eupl06g01823 1015 Pfam N-terminal domain of argonaute 166 299 IPR032474 -
Eupl06g01823 1015 ProSiteProfiles Piwi domain profile. 664 963 IPR003165 GO:0003676
Eupl06g01823 1015 FunFam Protein argonaute 7 355 484 - -
Eupl06g01823 1015 CDD Piwi_ago-like 526 962 IPR045246 -
Eupl06g01823 1015 Pfam PAZ domain 383 492 IPR003100 GO:0005515
Eupl06g01823 1015 SUPERFAMILY PAZ domain 356 518 IPR036085 GO:0005515
Eupl06g01823 1015 MobiDBLite consensus disorder prediction 66 94 - -
Eupl06g01823 1015 ProSiteProfiles PAZ domain profile. 361 480 IPR003100 GO:0005515
Eupl06g01823 1015 Pfam Piwi domain 665 962 IPR003165 GO:0003676
Eupl06g01823 1015 CDD PAZ_argonaute_like 362 479 - -
Eupl06g01823 1015 Pfam Argonaute linker 1 domain 309 359 IPR014811 -
Eupl06g01823 1015 Gene3D paz domain 355 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01823 Eupl-Chr6 38889115 38895577 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01823 117 1015 Eukaryotic Initiation Factors Gene Family AT1G48410 37.128 2.38e-167 517
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01823 K11593 - nnu:104608118 1172.15