Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01718 ATGGAAAATGATGAACCTCAGATCATATTTCATATATGTTCTCGTCCCTCCTCACAAAACACTCTGAAATTAACTATTTCTTGCATTACAATGCAGGCTATTCCAAGGAATGTTGTGAATGCAATAAGAGAAAAACTATCGGAAACAGTTAATCTTAAGGATTCAAGTGGTAACATTTGGAGTGTAGGATTAAGAGACAGTGGGGATGACTTATCGTTTGACCAGGGCTGGAAGCAATTTGTAAGAGATCATTCTTTGGAAAAGAATGATATATTGATCTTCCGATATGATGATGGTGGGGATTCATGTTTCCATGTTTTAATGTATGATCAAAATGGATGTGAGAAGGAAGGTTCAGATACTACTGGAGAGAGTGAGAGTTCTGTGGAGATTTTGGATTCCCCTCCACCTCGGGGACGTAATTTGTCAAAGAAGAACAAGAAGAAGGATAGAAAGAATGACACTAATGATGATCACCCAGAGACATCGCAGCGACGACAATCTTCTCGTCTGGCAGAATTAAGAAACCGCGAACATCCTTGTCCTCTAGTAGAACCAAAGATCAAAGCAGAACCTGTTGAAGGCCATATCGACACAGGACTATCATATTCTCTGTATTACGTATCGAAAAGAAGACCTGTAACTGATGTAGAGAGGCGTAATTGCAAACTTACAGCCTATGGAGTTGTATCGACCAAAATTAATTTCATTGCAGTAATGAAGCCTTCCCATGTCTGCAGGAAATTCTTCTTGACAATTCCCAGCAAAGTTGTGAGGGAATATATGTCCTGCAAAACCAAAGCTGTCATCCTCCGTGTTCCTCAGAGTTCGAAGACATGGATTACCAGCTTCCACTATAGAGCGTATTCTGCTGGAATATATGGGGAATGGGCAGATTTCGTAATGGATAACAACTTGGAAGAAGGGGATGTCTGCTTGTTTGAGTTGTGTGGAGAAGGACAAAGGAGCAGCAATTCCATCACCATGGATGTTTCTATATTCCGAGTGGTCGAAGAAGTCGTCCCTTTGACCAGGGTTAAACTACCTCATCCTGTCCGTGAAGAGATGTATTGGTCTTGA 1080 0.4111 MENDEPQIIFHICSRPSSQNTLKLTISCITMQAIPRNVVNAIREKLSETVNLKDSSGNIWSVGLRDSGDDLSFDQGWKQFVRDHSLEKNDILIFRYDDGGDSCFHVLMYDQNGCEKEGSDTTGESESSVEILDSPPPRGRNLSKKNKKKDRKNDTNDDHPETSQRRQSSRLAELRNREHPCPLVEPKIKAEPVEGHIDTGLSYSLYYVSKRRPVTDVERRNCKLTAYGVVSTKINFIAVMKPSHVCRKFFLTIPSKVVREYMSCKTKAVILRVPQSSKTWITSFHYRAYSAGIYGEWADFVMDNNLEEGDVCLFELCGEGQRSSNSITMDVSIFRVVEEVVPLTRVKLPHPVREEMYWS* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01718 359 Gene3D - 3 114 IPR015300 -
Eupl06g01718 359 MobiDBLite consensus disorder prediction 115 176 - -
Eupl06g01718 359 SUPERFAMILY DNA-binding pseudobarrel domain 23 114 IPR015300 -
Eupl06g01718 359 ProSiteProfiles B3 DNA-binding domain profile. 236 337 IPR003340 GO:0003677
Eupl06g01718 359 MobiDBLite consensus disorder prediction 148 176 - -
Eupl06g01718 359 CDD B3_DNA 236 335 IPR003340 GO:0003677
Eupl06g01718 359 Gene3D - 214 340 IPR015300 -
Eupl06g01718 359 SMART B3_2 236 337 IPR003340 GO:0003677
Eupl06g01718 359 SMART B3_2 21 112 IPR003340 GO:0003677
Eupl06g01718 359 Pfam B3 DNA binding domain 33 109 IPR003340 GO:0003677
Eupl06g01718 359 Pfam B3 DNA binding domain 236 321 IPR003340 GO:0003677
Eupl06g01718 359 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 27 339 IPR044837 -
Eupl06g01718 359 ProSiteProfiles B3 DNA-binding domain profile. 17 112 IPR003340 GO:0003677
Eupl06g01718 359 CDD B3_DNA 34 110 IPR003340 GO:0003677
Eupl06g01718 359 SUPERFAMILY DNA-binding pseudobarrel domain 234 335 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01718 Eupl-Chr6 35077298 35078552 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01718 34 336 B3 DNA Binding Superfamily AT3G18990 23.692 1.97e-22 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Eupl06g01718 B3 4.1e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01718 - - csin:114264651 197.978