Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01703 ATGGCGACTGCAATGGTGGAAGATAGTAGTTTCGAAGATGACCAGATCGCGTCCATGTCTTCAGACGACATTGTTAGGGCTTCTCGCCTTCTCGACAACGAGGTTCGAATACTCAAGGAAGAGTTGCAGAGAACGAATCTTGAGTTGGAATCATTCAAGGAGAAGATCAAAGAGAACCAGGAGAAAATCAAGCTCAACAAACAGCTCCCTTATCTAGTCGGTAACATTGTTGAGATTTTGGAGATGAACCCAGAAGACGAGGCTGAGGAAGATGGCGCCAATGTTGATCTAGACTCACAAAGGAAGGGGAAGTGTGTTGTGCTTAAAACTTCTACCCGCCAGACAATCTTTCTGCCTGTTGTGGGACTTGTTGATCCCGACAAGCTAAAACCTGGCGATTTGGTTGGTGTTAACAAAGACAGCTACCTGATATTAGATACCCTTCCTTCTGAATATGATTCACGTGTAAAGGCAATGGAGGTTGATGAAAAACCCACAGAAGATTACAATGATATTGGTGGCCTTGAAAAGCAGATTCAAGAACTTGTTGAGGCCATTGTTTTGCCAATGACCCACAAAGAGAGGTTTCAGAAATTAGGAATTCGTCCACCCAAAGGAGTTCTTTTATACGGACCACCTGGAACGGGCAAAACTTTAATGGCTCGTGCATGTGCAGCACAGACAAATGCCACTTTTTTGAAGCTAGCGGGTCCACAATTGGTCCAGATGTTCATTGGTGATGGCGCGAAACTCGTTCGTGATGCTTTTCAACTTGCGAAGGAGAAATCTCCCTGCATCATTTTTATAGACGAAATTGATGCAATTGGAACAAAGCGATTTGATAGTGAAGTAAGTGGAGATAGGGAAGTGCAGAGGACAATGTTGGAACTACTTAATCAGCTTGATGGTTTTAGCAGTGATGACCGTATAAAGGTCATAGCAGCAACCAATCGTGCCGATATTCTGGATCCTGCTCTCATGCGTTCAGGTCGCTTGGATCGCAAAATTGAGTTCCCACATCCGACTGAGGAAGCAAGGGCCAGAATACTGCAGATCCATTCGAGAAAAATGACTGTGCATCCAGACGTCAACTTTGAAGAACTGGCTCGTTCGACTGATGACTTCAATGGGGCACAACTAAAAGCTGTTTGTGTAGAGGCTGGCATGCTGGCTCTCCGCCGAGATGCGACTGAGGTTCTATTTTGTGCCACCTTCTCTCTTGCTATTATCAATAGATTCATACCATGGAATGTCACTTTGTTCTCTCATGTGTACAGGAATGAGTTGATTATTGCTATTGTTGTTGGCGCTACCACCCTAGGAATTAAATTTTTACACCTACTGGAATCACATGACTGA 1359 0.443 MATAMVEDSSFEDDQIASMSSDDIVRASRLLDNEVRILKEELQRTNLELESFKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANVDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVLFCATFSLAIINRFIPWNVTLFSHVYRNELIIAIVVGATTLGIKFLHLLESHD* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01703 452 Pfam AAA+ lid domain 362 399 IPR041569 -
Eupl06g01703 452 Pfam Proteasomal ATPase OB C-terminal domain 73 149 IPR032501 -
Eupl06g01703 452 Pfam ATPase family associated with various cellular activities (AAA) 207 339 IPR003959 GO:0005524|GO:0016887
Eupl06g01703 452 Gene3D - 342 409 - -
Eupl06g01703 452 FunFam 26S protease regulatory subunit 6A 159 340 - -
Eupl06g01703 452 Gene3D - 33 158 IPR012340 -
Eupl06g01703 452 FunFam 26S protease regulatory subunit 6A 342 411 - -
Eupl06g01703 452 ProSitePatterns AAA-protein family signature. 310 328 IPR003960 GO:0005524|GO:0016887
Eupl06g01703 452 Gene3D - 159 340 IPR027417 -
Eupl06g01703 452 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 17 400 - -
Eupl06g01703 452 Coils Coil 28 69 - -
Eupl06g01703 452 FunFam 26S protease regulatory subunit 6A 31 158 - -
Eupl06g01703 452 SMART AAA_5 203 342 IPR003593 GO:0016887
Eupl06g01703 452 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 398 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01703 Eupl-Chr6 34683839 34694631 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01703 148 394 Calmodulin-binding Proteins AT3G56690 38.889 1.91e-45 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01703 K03065 - ming:122077305 759.985