Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01700 ATGGATGAAATCCATCTCCACCATCACAATCTCTTACTCACAACCACACCTCCCACGCAAAGCCCCTGTCCCAGCATAGCCAAAGATGAACTCCATGAACCAAGGCTCGACTTCAACGTCATGGTCATTGTCGCTGCCATGTTATGTGCTCTAGTCTGTGCCATCGGCCTCCATTCCATGCTACAATGTGTTGTAAGATGCACGCGACGTGCACTTACTGAACCAATTGAGTGGTTTGCATCACGACGCCTGAACTCAGGTCTTAAGGAAAAAGACATGGTTGCGCTACCTACTTCGACCTACGTCGTGTCCGGCTCACCACCCTCTACTTCCACTTCCGGATGTTCTATTTGCCTAGCAGACTTCTTGGACGGAGACAAGATACGGGTCCTACCCAAGTGCAACCATCGCTTCCATGTTGGCTGCATCGATACCTGGCTCCTGTCTCACTCCTCGTGCCCTACTTGCCGGTATCGACTCAAGTCTCGTGACTCTATGACCCCTCTAGAAAGTGTTACAACAACGTGA 528 0.5076 MDEIHLHHHNLLLTTTPPTQSPCPSIAKDELHEPRLDFNVMVIVAAMLCALVCAIGLHSMLQCVVRCTRRALTEPIEWFASRRLNSGLKEKDMVALPTSTYVVSGSPPSTSTSGCSICLADFLDGDKIRVLPKCNHRFHVGCIDTWLLSHSSCPTCRYRLKSRDSMTPLESVTTT* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01700 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 163 IPR013083 -
Eupl06g01700 175 SMART ring_2 115 156 IPR001841 -
Eupl06g01700 175 CDD RING-H2_EL5-like 115 157 - -
Eupl06g01700 175 Pfam Ring finger domain 115 157 IPR001841 -
Eupl06g01700 175 SUPERFAMILY RING/U-box 114 167 - -
Eupl06g01700 175 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Eupl06g01700 175 PANTHER RING-H2 FINGER PROTEIN ATL78 14 162 IPR044602 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01700 Eupl-Chr6 34591829 34592477 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01700 14 160 C3H Transcription Factor Family AT3G10910 46.452 1.48e-37 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01700 - K19040 tcc:18607019 222.631