Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01684 ATGGGGAAGAAGAAGAAGAGGGCTTCGAAGGTCTGGTGTTATTACTGCGATCGAGAGTTCGACGACGAGAAAATACTCGTACAACACCAGAAGGCCAAGCACTTCAAATGCCATGTCTGCCATAAGAAACTCTCCACCGCTGGAGGAATGTCCATCCATGTTCTCCAGGTTCACAAGGAATCTGTCACCAAGGTTCCTAATGCTAAACCTGACAGAGAATCAACAGAAATTGAAATTTTTGGAATGCAAGGAATTCCACCTGAAATTTTAGCGGCTCACTATGGAGAGCAAGATGAAGATACCCCATCAAAGTCGGCCAAAGTGGAGATTCCGTCATCCAATTTTGTTGGTGGTGTGGTGCCAGGTTCAGTAGGCATTAGGTTTCCTCCACAATCAACTTTTGGTGCGATGCGACCAATTTACAACTCTGCACTAGCGGTTGCACCTTCAGGTTGGCCAATTCCTGCTCGTCCACAACCTTGGTTTCCACAGCATCCACCAGTTTCACTGCCTACTGTTGCCCCCGTGGGACTGGCACAACAGCCTTTATTTCCCATACAGAATCTGAAACCTCCTCTGTCATCCACTACGTCCCCTGCACTTCCACCACCATTTCAGATTGCTCCACCTGGACCGCCCACATCAACGCCTCCACTTCCTGTATCTCAACCCTTATTCCCTGTTAGTGTTAATAGTAATACACCCACTCAAAGTTCACCATTTTCGGCGCCTGCAATTTCAGCAACCATTTCATCAAGCACTCCAGTAGAACTTAAAAACTCGGTTGACACATATTCCAGTGCTGACACTTCTACGATGAATAGCTACCATGCTCCAAGCAACCAAGGTGGGCCACTCATCAATTCACATTCGTATGCATCTGGTCCAAATACTGGCGGTCCTTCAATTGGGCCCCCTCCTGTAATCTCTAACAAAGCTCCTGCTACCCAGCCAGCTACTAATGAAGTCTATTTAGTTTGGGATGATGAGGCAATGTCCATGGAGGAAAGAAGGATGTCCTTAGTGAAGTATCAGGTGCATGATGAAACTAGCCAGGTAAGTGGTAACTATCTCTATTCTCTCATTCATTCAAATGGATACAAGAGTTGTTTTGCACATCCAAATGGATGGGTAGGCTTTACTTTTTGCCACTTCAGATTCCACTCTTTTGCCATTGTTTACACATACATGTGA 1194 0.4598 MGKKKKRASKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMSIHVLQVHKESVTKVPNAKPDRESTEIEIFGMQGIPPEILAAHYGEQDEDTPSKSAKVEIPSSNFVGGVVPGSVGIRFPPQSTFGAMRPIYNSALAVAPSGWPIPARPQPWFPQHPPVSLPTVAPVGLAQQPLFPIQNLKPPLSSTTSPALPPPFQIAPPGPPTSTPPLPVSQPLFPVSVNSNTPTQSSPFSAPAISATISSSTPVELKNSVDTYSSADTSTMNSYHAPSNQGGPLINSHSYASGPNTGGPSIGPPPVISNKAPATQPATNEVYLVWDDEAMSMEERRMSLVKYQVHDETSQVSGNYLYSLIHSNGYKSCFAHPNGWVGFTFCHFRFHSFAIVYTYM* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01684 397 SMART c2h2final6 35 58 IPR013087 -
Eupl06g01684 397 SMART c2h2final6 11 34 IPR013087 -
Eupl06g01684 397 ProSitePatterns Zinc finger C2H2 type domain signature. 37 58 IPR013087 -
Eupl06g01684 397 Gene3D Classic Zinc Finger 1 65 - -
Eupl06g01684 397 ProSiteProfiles Zinc finger BED-type profile. 6 65 IPR003656 GO:0003677
Eupl06g01684 397 MobiDBLite consensus disorder prediction 191 241 - -
Eupl06g01684 397 ProSitePatterns Zinc finger C2H2 type domain signature. 13 34 IPR013087 -
Eupl06g01684 397 MobiDBLite consensus disorder prediction 270 315 - -
Eupl06g01684 397 MobiDBLite consensus disorder prediction 196 224 - -
Eupl06g01684 397 CDD SUF4-like 10 91 - -
Eupl06g01684 397 MobiDBLite consensus disorder prediction 225 241 - -
Eupl06g01684 397 PANTHER ZINC FINGER PROTEIN 207 1 351 - -
Eupl06g01684 397 MobiDBLite consensus disorder prediction 270 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01684 Eupl-Chr6 34129703 34147065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01684 1 375 C2H2 Transcription Factor Family AT1G30970 58.747 7.47e-137 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl06g01684 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01684 - - nnu:104599735 552.362