Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01635 ATGTCTCGGATATGTGTCAAGAATTTACCTAAATATGTCGTGGAGGATCGCCTTAGAGAGTTCTTCTCTCAGAAAGGAGAAGTAACTGACGCGAAGCTCATGCGAACCAAAGATGGTAAGAGCAGGCAATTTGCTTTTATCGGGTTTCGAACCGAGCAAGAGGCCAACGAAGCTCTCAAGTACTTCAACAACTCTTACATGGATACTTCTAGACTCACATGTGAGATCGCTCGTAAAGTTGGGGATCCAAATACTCCTCGTCCATGGAGTCAGTATTCTGCAAAGAAACAAGAGAGATTGAACGAAGAGAACAGGAAAACTGCTGGTGCTAAAAGTTCGACCCTAGTGGGTTCTAAAGGAAAGTCGAAGAATTCTAAAAAAAACAGCGAGAATAGTGACCCTGAGCTTCAAGAGTTTCTTCAGGTCATGCAGCCCCGGATTAAGTCAAAGTTGTGGGCGAATGATACATTGGGAAATACCCTTGAACAAAATTGCAAAGCCGGTGGGAACGAAACTCAGTCACACAAGGGAGACAAAAAGAAATCAGTTCCAATGCAGGTTGAATTAGATGAAGATGATGAAAGTGAAAATGGGTCGTCTGGGATTCATGCTGCAAAGCAGTCACATGATCTAGCTCATGACAAGGTTGTCTCAGATATGGATTATTTCAAAAGTAGAGTTAAGAAAGAGTGGTCAGATTCAGATTCAGAAAGTGATGATGCTGGTTCGCTAAGTGAAAGCCTAGATGCTCAAGATGTGGATGTGAAGGAACCCCATGATGTCCATACAGGAGACCCCCCACAAGAGAAGACCAAAGAGGAGGGCACTAATGAAGAATCTGATGGTGAAATGATCGACTCTGGAAATCCTTTGTCAGATTTAAAAGATGAGAAAAAAATGGTTCTCGAAACGGGCCGTCTCTTTGTCCGTAATCTTCCATACACTGCAACTGAGGATGACCTGGCAGAGCTTTTCAGCAAATTTGGTGATGTATCGCAGGTCCATCTTGTAGTTGATAAAGATACCAAACGGTCCAAAGGATTTGCTTATGTTCTCTACACACTTCCAGAATCTGCAGTTAGGGCATTAGAAGAGTTAGACAATTCAATTTTCCAAGGCAGATTATTGCATATTATGCCAGCAAAGCAACAAAATTCTTCTGAGAAGCAAGAGTCTAATGTTGTTGCCCAAGCTTCAAAAACTTTTAAGAAACAGAGAGAGGATCAGAGAAAGGCATCTGAAGCTAGTGGAGATACACGAGCATGGAACAGTATGTTCATGCGTCCTGATACAGTTGTTGAAAACATTGCTAGGAAATATGGTGTCAGTAAAAGTGATATACTTGACTGGGAAGCAGACGATCTTGCTGTGCGTACTGCTTTGGCAGAAACACAAGTGATTGCAGAGACTAAAAAATCTCTAGTAAATGCTGGAGTGAATCCAGCTGCTTTAGAGGAGTTCAATTCTGGAAAAACTGATGGTGTTAAAAGAAGCAACCATGTTATACTAGTGAAGAACTTGCCCTATGGTTCTTCTGAAGGAGATCTTGCTAACATGTTTGGGAAATTTGGGAGTTTGGACAAAATTATTCTTCCCTCAACAAAAGCATTGGCTTTGGTCATTTTCCTTGAAGCAGCTGAAGCTCGTGCAGCTTTCAAAGGTCTTGCATATAAGCGTTTCAAAGATGCTCCATTGTATTTGGAATGGGCTCCCAGCAATATTCTCTCTCCGGGTTCAACATCAGATACTGATTCACGAAATAATGTTGTTGGTGAACAAGATGTCAAGAGAGTATTATTAGAGCAACGTGTGGAAGGAATGTCTGAAGTGGATAGTGATCCTGATAGGGTTGAGTCGCGATCTCTATTTGTCAAGAATCTGAATTTCAGGACATCTGATGAGTGTTTGAGAAAACATTTAAGTGAAAATATGAAGGAGGGAAGGATCCAAAGTGTTAAGGTAAAAAAGCACATAAAAAATGGAAAGAGTGTCTCAATGGGTTTTGGTTTCATTGAGTTTGATTCTGTGGAAACAGCAGCAAATGTATGCAGGGATTTGCAGGGAACTATTTTAGATGGACATGCTCTTATTTTGCAACTTTGCCATGCCAAGAAGGATGATCAAGTGCTGAAAAAAGCTGAGAAAGATAGGAGTTCGACAAAAATAATAGTGAGAAACGTTGCCTTTGAGGCAACGGAAAAAGATCTCAGGCAGTTGTTTAGTCCATTTGGTCAGATTAAGAGATTAAGGCTGCCCATGAAGTTAGGAAACCACAGAGGATTTGCATTTGTGGAGTACGTTACAAAGCAAGAAGCGCAGAATGCTCTGCAAGCTCTTTCAAGCACCCATCTGTACGGTCGGCACCTGGTCTTGGAGCGAGCAAAGGAAGGTGAGAGCTTGGAAGAATTGCGGGCTCGAACAGCTGCCCAGTTCACTGATGAGCAAAATGGGTTTCAGAATTCGACAAAGCTGTCAAAGAAAAGGAAGCACTTGGCCATCATCGATGAAGACAGTTTCAAGTTTGAAAGGATTGCAGATTAG 2541 0.4179 MSRICVKNLPKYVVEDRLREFFSQKGEVTDAKLMRTKDGKSRQFAFIGFRTEQEANEALKYFNNSYMDTSRLTCEIARKVGDPNTPRPWSQYSAKKQERLNEENRKTAGAKSSTLVGSKGKSKNSKKNSENSDPELQEFLQVMQPRIKSKLWANDTLGNTLEQNCKAGGNETQSHKGDKKKSVPMQVELDEDDESENGSSGIHAAKQSHDLAHDKVVSDMDYFKSRVKKEWSDSDSESDDAGSLSESLDAQDVDVKEPHDVHTGDPPQEKTKEEGTNEESDGEMIDSGNPLSDLKDEKKMVLETGRLFVRNLPYTATEDDLAELFSKFGDVSQVHLVVDKDTKRSKGFAYVLYTLPESAVRALEELDNSIFQGRLLHIMPAKQQNSSEKQESNVVAQASKTFKKQREDQRKASEASGDTRAWNSMFMRPDTVVENIARKYGVSKSDILDWEADDLAVRTALAETQVIAETKKSLVNAGVNPAALEEFNSGKTDGVKRSNHVILVKNLPYGSSEGDLANMFGKFGSLDKIILPSTKALALVIFLEAAEARAAFKGLAYKRFKDAPLYLEWAPSNILSPGSTSDTDSRNNVVGEQDVKRVLLEQRVEGMSEVDSDPDRVESRSLFVKNLNFRTSDECLRKHLSENMKEGRIQSVKVKKHIKNGKSVSMGFGFIEFDSVETAANVCRDLQGTILDGHALILQLCHAKKDDQVLKKAEKDRSSTKIIVRNVAFEATEKDLRQLFSPFGQIKRLRLPMKLGNHRGFAFVEYVTKQEAQNALQALSSTHLYGRHLVLERAKEGESLEELRARTAAQFTDEQNGFQNSTKLSKKRKHLAIIDEDSFKFERIAD* 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01635 846 MobiDBLite consensus disorder prediction 107 122 - -
Eupl06g01635 846 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 79 IPR000504 GO:0003723
Eupl06g01635 846 MobiDBLite consensus disorder prediction 382 400 - -
Eupl06g01635 846 SUPERFAMILY RNA-binding domain, RBD 300 386 IPR035979 GO:0003676
Eupl06g01635 846 CDD RRM4_RBM19_RRM3_MRD1 500 571 - -
Eupl06g01635 846 CDD RRM5_RBM19_like 621 701 IPR034423 -
Eupl06g01635 846 FunFam Multiple RNA-binding domain-containing protein 1 714 820 - -
Eupl06g01635 846 SMART rrm2_1 3 75 IPR003954 GO:0003676
Eupl06g01635 846 SMART rrm2_1 306 379 IPR003954 GO:0003676
Eupl06g01635 846 SMART rrm1_1 621 699 IPR000504 GO:0003723
Eupl06g01635 846 SMART rrm1_1 501 568 IPR000504 GO:0003723
Eupl06g01635 846 SMART rrm1_1 306 379 IPR000504 GO:0003723
Eupl06g01635 846 SMART rrm1_1 721 792 IPR000504 GO:0003723
Eupl06g01635 846 SMART rrm1_1 3 75 IPR000504 GO:0003723
Eupl06g01635 846 SUPERFAMILY RNA-binding domain, RBD 497 585 IPR035979 GO:0003676
Eupl06g01635 846 Gene3D - 590 710 IPR012677 -
Eupl06g01635 846 FunFam Multiple RNA-binding domain-containing protein 1 491 593 - -
Eupl06g01635 846 MobiDBLite consensus disorder prediction 172 188 - -
Eupl06g01635 846 MobiDBLite consensus disorder prediction 401 415 - -
Eupl06g01635 846 Gene3D - 166 394 IPR012677 -
Eupl06g01635 846 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 620 703 IPR000504 GO:0003723
Eupl06g01635 846 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 383 IPR000504 GO:0003723
Eupl06g01635 846 MobiDBLite consensus disorder prediction 79 134 - -
Eupl06g01635 846 CDD RRM6_RBM19_RRM5_MRD1 720 794 - -
Eupl06g01635 846 SUPERFAMILY RNA-binding domain, RBD 607 706 IPR035979 GO:0003676
Eupl06g01635 846 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 276 401 - -
Eupl06g01635 846 SUPERFAMILY RNA-binding domain, RBD 3 87 IPR035979 GO:0003676
Eupl06g01635 846 CDD RRM1_MRD1 2 77 - -
Eupl06g01635 846 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 720 796 IPR000504 GO:0003723
Eupl06g01635 846 MobiDBLite consensus disorder prediction 382 417 - -
Eupl06g01635 846 MobiDBLite consensus disorder prediction 228 293 - -
Eupl06g01635 846 Gene3D - 1 132 IPR012677 -
Eupl06g01635 846 FunFam Nucleotide/nucleic acid binding protein 616 711 - -
Eupl06g01635 846 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 71 IPR000504 GO:0003723
Eupl06g01635 846 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 307 377 IPR000504 GO:0003723
Eupl06g01635 846 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 722 789 IPR000504 GO:0003723
Eupl06g01635 846 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 502 564 IPR000504 GO:0003723
Eupl06g01635 846 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 622 696 IPR000504 GO:0003723
Eupl06g01635 846 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 500 572 IPR000504 GO:0003723
Eupl06g01635 846 FunFam RNA-binding motif protein 19 1 100 - -
Eupl06g01635 846 MobiDBLite consensus disorder prediction 163 213 - -
Eupl06g01635 846 SUPERFAMILY RNA-binding domain, RBD 714 798 IPR035979 GO:0003676
Eupl06g01635 846 Gene3D - 492 589 IPR012677 -
Eupl06g01635 846 Gene3D - 711 821 IPR012677 -
Eupl06g01635 846 MobiDBLite consensus disorder prediction 250 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01635 Eupl-Chr6 32516395 32556590 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01635 609 812 Eukaryotic Initiation Factors Gene Family AT4G34110 29.167 6.10e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01635 K14787 - ming:122093966 1233.01