Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01631 ATGCAGCCCCGGATTAAGTCAAAGTTGTGGGCGAATGATACATTGGGAAATACCCTTGAACAAAATTGCAAAGCCGGTGGGAACGAAACTCAGTCACACAAGGGAGACAAAAAGAAATCAGTTCCAATGCAGGTTGAATTAGATGAAGATGATGAAAGTGAAAATGGGTCTTCTGGGATTCATGCTGCAAAGCAGTCACATGATCTAGCTCATGACAAGGTTGTCTCAGATATGGATTATTTCAAAAGTAGAGTTAAGAAAGAGTGGTCAGATTCAGATTCAGAAAGTGATGATGCTGGTTCGCTAAGTGAAAGCCTAGATGCTCAAGATGTGGATGTGAAGGAACCCCATGATGTCCATACAGGAGACCCCCCACAAGAGAAGACCAAAGAGGAGGGCACTAATGAAGAATCTGATGGTGAAATGATTGACTCTGGAAATCCTTTGTCAAATTTAAAAGATGAGAAAAAAATGGTTCTCGAAACGGGCCGTCTCTTTGTCCGTAATCTTCCATACACTGCAACTGAGGATGACCTGGCAGAGCTTTTCAGCACATTTGGTGATGTATCGCAGGTCCATCTTGTAGTTGATAAAGATACCAAACGGTCCAAAGGATTTGCTTATGTTCTCTACACACTTCCAGAATCTGCAGTTAGGGCATTAGAAGAGTTAGACAATTCAATTTTCCAAGGCAGATTATTGCATATTATGCCAGCAAAGCAACAAAATTCTTCTGAGAAGCAAGAGTCTAATGTTGCTGCCCAAGCTTCAAAAACTTTTAAGAAACAGAGAGAGGATCAGAGAAAGGCATCTGAAGCTAGTGGAGATACACGAGCATGGAACAGTATGTTCATGCGTCCTGATACAGTTGTTGAAAACATTGCTAGGAAATATGGTGTCAGTAAAAGTGATATACTTGACTGGGAAGCAGACGATCTTGCTGTGCGTACTGCTTTGGCAGAAACACAAGTGATTGCAGAGACTAAAAAATCTCTAGTAAATGCTGGAGTGAATCCAGCTGCTTTAGAGGAGTTCAATTCTGGAAAAACTGATGGTGTTAAAAGAAGCAACCATGTTATACTAGTGAAGAACTTGCCCTATGGTTCTTCTGAAGGAGATCTTGCTAACATGTTTGGGAAATTTGGGAGTTTGGACAAAATTATTCTTCCCTCAACAAAAGCATTGGCTTTGGTCATTTTCCTTGAAGCAGCTGAAGCTCGTGCAGCTTTCAAAGGTCTTGCATATAAGCGTTTCAAAGATGCTCCATTGTATTTGGAATGGGCTCCCAGCAATATTCTCTCTCCGGGTTCAACATCAGATACTGATTCACGAAATAATGTTGTTGGTGAACAAGATGTCAAGAGAGTATTATTAGAGCAACGTGTGGAAGGAATGTCTGAAGTGGATAGTGATCCTGATAGGGTTGAGTCGCGATCTCTATTTGTCAAGAATCTGAATTTCAGGACATCTGATGAGTGTTTGAGAAAACATTTAAGTGAAAATATGAAGGAGGGAAGGATCCAAAGTGTTAAGGTAAAAAAGCACATAAAAAATGGGAAGAGTGTCTCAATGGGTTTTGGTTTCATTGAGTTTGATTCTGTGGAAACAGCAGCAAATGTATGCAGGGATTTGCAGGGAACTATTTTAGATGGACATGCTCTTATTTTGCAACTTTGCCATGCCAAGAAGGATGATCAAGTGCTGAAAAAAGCTGAGAAAGATAGGAGTTCGACAAAAATAATAGTGAGAAACGTTGCCTTTGAGGCAACGGAAAAAGATCTCAGGCAGTTGTTTAGTCCATTTGGTCAGATTAAGAGATTAAGGCTGCCCATGAAGTTAGGAAACCACAGAGGATTTGCATTTGTGGAGTACGTTACAAAGCAAGAAGCGCAGAATGCTCTGCAAGCTCTTTCAAGCACCCATCTGTACGGTCGGCACCTGGTCTTGGAGCGAGCAAAGGAAGGTGAGAGCTTGGAAGAATTGCGGGCTCGAACAGCTGCCCAGTTCACTGATGAGCAAAATGGGTTTCAGAATTCGACAAAGCTGTCAAAGAAAAGGAAGCACTTGGCCATCATCGACGAAGACAGTTTCAAGTTTGAAAGGATTGCAGATTAG 2115 0.4151 MQPRIKSKLWANDTLGNTLEQNCKAGGNETQSHKGDKKKSVPMQVELDEDDESENGSSGIHAAKQSHDLAHDKVVSDMDYFKSRVKKEWSDSDSESDDAGSLSESLDAQDVDVKEPHDVHTGDPPQEKTKEEGTNEESDGEMIDSGNPLSNLKDEKKMVLETGRLFVRNLPYTATEDDLAELFSTFGDVSQVHLVVDKDTKRSKGFAYVLYTLPESAVRALEELDNSIFQGRLLHIMPAKQQNSSEKQESNVAAQASKTFKKQREDQRKASEASGDTRAWNSMFMRPDTVVENIARKYGVSKSDILDWEADDLAVRTALAETQVIAETKKSLVNAGVNPAALEEFNSGKTDGVKRSNHVILVKNLPYGSSEGDLANMFGKFGSLDKIILPSTKALALVIFLEAAEARAAFKGLAYKRFKDAPLYLEWAPSNILSPGSTSDTDSRNNVVGEQDVKRVLLEQRVEGMSEVDSDPDRVESRSLFVKNLNFRTSDECLRKHLSENMKEGRIQSVKVKKHIKNGKSVSMGFGFIEFDSVETAANVCRDLQGTILDGHALILQLCHAKKDDQVLKKAEKDRSSTKIIVRNVAFEATEKDLRQLFSPFGQIKRLRLPMKLGNHRGFAFVEYVTKQEAQNALQALSSTHLYGRHLVLERAKEGESLEELRARTAAQFTDEQNGFQNSTKLSKKRKHLAIIDEDSFKFERIAD* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01631 704 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 578 654 IPR000504 GO:0003723
Eupl06g01631 704 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 360 422 IPR000504 GO:0003723
Eupl06g01631 704 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 480 554 IPR000504 GO:0003723
Eupl06g01631 704 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 580 647 IPR000504 GO:0003723
Eupl06g01631 704 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 165 235 IPR000504 GO:0003723
Eupl06g01631 704 MobiDBLite consensus disorder prediction 108 136 - -
Eupl06g01631 704 SUPERFAMILY RNA-binding domain, RBD 158 244 IPR035979 GO:0003676
Eupl06g01631 704 CDD RRM6_RBM19_RRM5_MRD1 578 652 - -
Eupl06g01631 704 Gene3D - 570 679 IPR012677 -
Eupl06g01631 704 Gene3D - 350 451 IPR012677 -
Eupl06g01631 704 FunFam Multiple RNA-binding domain-containing protein 1 349 451 - -
Eupl06g01631 704 SMART rrm2_1 164 237 IPR003954 GO:0003676
Eupl06g01631 704 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 163 241 IPR000504 GO:0003723
Eupl06g01631 704 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 358 430 IPR000504 GO:0003723
Eupl06g01631 704 FunFam Nucleotide/nucleic acid binding protein 474 569 - -
Eupl06g01631 704 FunFam Multiple RNA-binding domain-containing protein 1 572 678 - -
Eupl06g01631 704 Gene3D - 28 252 IPR012677 -
Eupl06g01631 704 MobiDBLite consensus disorder prediction 1 151 - -
Eupl06g01631 704 SMART rrm1_1 164 237 IPR000504 GO:0003723
Eupl06g01631 704 SMART rrm1_1 479 557 IPR000504 GO:0003723
Eupl06g01631 704 SMART rrm1_1 359 426 IPR000504 GO:0003723
Eupl06g01631 704 SMART rrm1_1 579 650 IPR000504 GO:0003723
Eupl06g01631 704 MobiDBLite consensus disorder prediction 11 29 - -
Eupl06g01631 704 MobiDBLite consensus disorder prediction 259 273 - -
Eupl06g01631 704 MobiDBLite consensus disorder prediction 240 258 - -
Eupl06g01631 704 SUPERFAMILY RNA-binding domain, RBD 355 443 IPR035979 GO:0003676
Eupl06g01631 704 MobiDBLite consensus disorder prediction 30 46 - -
Eupl06g01631 704 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 478 561 IPR000504 GO:0003723
Eupl06g01631 704 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 564 654 - -
Eupl06g01631 704 Gene3D - 452 569 IPR012677 -
Eupl06g01631 704 CDD RRM4_RBM19_RRM3_MRD1 358 429 - -
Eupl06g01631 704 MobiDBLite consensus disorder prediction 240 276 - -
Eupl06g01631 704 SUPERFAMILY RNA-binding domain, RBD 465 564 IPR035979 GO:0003676
Eupl06g01631 704 SUPERFAMILY RNA-binding domain, RBD 572 656 IPR035979 GO:0003676
Eupl06g01631 704 CDD RRM5_RBM19_like 479 559 IPR034423 -
Eupl06g01631 704 MobiDBLite consensus disorder prediction 65 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01631 Eupl-Chr6 32321440 32357880 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01631 467 670 Eukaryotic Initiation Factors Gene Family AT4G34110 29.167 2.84e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01631 K14787 - ming:122093966 1010.75