Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01602 ATGTCGATAACCCGCATCGCCCTACGCAGCTGCAAGCTGCCCCTTCGTCCCTCGCACACCTCTTGCCTGCATTCCCATCGTTCTCTCCGCCAGATAAGCATGGACACACAAAGCACTGCTGCTCAGCTGGGTGTTTCTGGTCTCTTACGAACTCAAGGACTTATAGGAGGGAAATGGACTGATGCATATGATGGAAAGACCATAAAGGTGTGCAACCCCGCCACTGGTGATGTGATAGCAAATGTCCCATGCATGGGTAGGAGGGAGACAACTGATGCGATATCTTCAGCATACAACACTTTCCATTCATGGAGCAAACTCACTGCAGGTGAAAGGAGCAAATGTCTACGGAAATGGTACGATTTACTGATTGCCCATAAAGAAGAGCTTGGGAAACTCATAACATTAGAGCAAGGGAAACCTTTGAAAGAAGCTGTTGGTGAGGTTAACTATGGGGCCAGCTTTATTGAGTTCTATGCGGAGGAAGCAAAACGTGTGTATGGCGATATAATTCCAGCCACACTAACTGATCGCCGGTTATTTGTTTTAAAACAGCCTGTAGGTGTTGTTGGAGCAATTACTCCCTGGAACTTTCCTTTGGCCATGATTACTCGGAAGGTTGGCCCTGCTCTTGCTTGTGGTTGTACAGTGGTTATTAAACCCTCTGAACTTACACCCTTGACAGCTTTAGCAGCAGCTGAGCTCTCTCTTCAGGCTGGAATACCGCCGGGTGTTGTGAATGTGGTCATGGGGAATGCTGCTGATATTGGAGACACTCTCCTAGAGAGTCCACAGGTACGAAAGATCACTTTCACGGGTTCAACAGCTGTTGGAAAGAAATTGATGGCAGGTGCTGCAGGGACTGTTAAAAAGGTATCCTTGGAACTTGGTGGGAATGCACCCTGCATAATCTTTGACGATGCAGACTTGGACGTGGCAGTAAAAGGAAGTCTTGCTGCGAAGTTCCGTAATAGTGGGCAAACATGCGTTTGTGCAAATAGAATAATAGTGCAAGAAGGTATTTATGAGAAATTCGCAAATGCTTTGGCCAGTGCTGTCCAAAATTTGGAAGTTGGCAATGGATTCATAGAGGGTGTAGCCCAGGGTCCTCTAATCAATGAAGCTGCTGTACAGAAGGTTGAATTATTTGTTCAAGATGCTATCTCAAAGGGAGCAAAAATCATTCTTGGGGGTAAAAGACATAGCCTTGGGATGACATTTTATGAGCCTACAGTAATCAGCGATGTCAACAGTGAGATGCTTATATCAAGGGAGGAAGTATTTGGACCTGTTGCACCCCTTATACGTTTTAAAACCGAGGAGGAAGCCATTCGCATTGCTAATGACACCAATGCAGGTCTAGCTGCTTACGTATTTACGACGAATGTCCAGCGTTCTTGGCGCGTGTCAGAAGCTCTTGAATATGGACTGGTTGGCGTCAATGAAGGAATAATATCTACAGAGGTGGCACCATTTGGAGGGGTCAAACAGTCTGGTCTTGGACGAGAAGGTTCTAAGTATGGGATGGATGAATACATGGAAATGAAATATGTGTGCTTAGGGAACATGAATAGTGCATGA 1581 0.4592 MSITRIALRSCKLPLRPSHTSCLHSHRSLRQISMDTQSTAAQLGVSGLLRTQGLIGGKWTDAYDGKTIKVCNPATGDVIANVPCMGRRETTDAISSAYNTFHSWSKLTAGERSKCLRKWYDLLIAHKEELGKLITLEQGKPLKEAVGEVNYGASFIEFYAEEAKRVYGDIIPATLTDRRLFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSLQAGIPPGVVNVVMGNAADIGDTLLESPQVRKITFTGSTAVGKKLMAGAAGTVKKVSLELGGNAPCIIFDDADLDVAVKGSLAAKFRNSGQTCVCANRIIVQEGIYEKFANALASAVQNLEVGNGFIEGVAQGPLINEAAVQKVELFVQDAISKGAKIILGGKRHSLGMTFYEPTVISDVNSEMLISREEVFGPVAPLIRFKTEEEAIRIANDTNAGLAAYVFTTNVQRSWRVSEALEYGLVGVNEGIISTEVAPFGGVKQSGLGREGSKYGMDEYMEMKYVCLGNMNSA* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01602 526 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 322 333 IPR016160 GO:0016491
Eupl06g01602 526 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 46 523 - -
Eupl06g01602 526 CDD ALDH_F5_SSADH_GabD 70 520 - -
Eupl06g01602 526 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 65 512 IPR016162 GO:0016491
Eupl06g01602 526 Pfam Aldehyde dehydrogenase family 59 518 IPR015590 GO:0016491
Eupl06g01602 526 SUPERFAMILY ALDH-like 37 521 IPR016161 GO:0016491
Eupl06g01602 526 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 298 487 IPR016163 GO:0016620
Eupl06g01602 526 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 294 301 IPR029510 GO:0016491
Eupl06g01602 526 FunFam Succinate-semialdehyde dehydrogenase I 298 487 - -
Eupl06g01602 526 FunFam Succinate-semialdehyde dehydrogenase I 65 308 - -
Eupl06g01602 526 NCBIfam succinate-semialdehyde dehydrogenase 70 516 IPR010102 GO:0009013|GO:0009450
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01602 Eupl-Chr6 31758187 31806827 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01602 5 524 Aldehyde Dehydrogenase Gene Family AT1G79440 80.385 0.0 848
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01602 K17761 - ming:122086042 888.641