Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01595 ATGGCTTCTTCGCGAATCGAAATGGCTTCTTCACCTTACAGTAATGTTCTGAGGGATCACAATCAGAGAGTGAGACATAGAGACAGAGAAAGAGGAAGCAATTCCCGAGCCCAGGCAGCTTTCCAGAAGAATCTCAAAGAGTTGGTGAGAGATAACCTCCACACCTGCATTGTCCTCTCTGCCCCAAGAGATACTGATGCTGTTGTTGATGAGAATTCTCAACATCGGATCGAAAATCGGGATTGTTGGACCAGCGATGAAGAGAGGAATGGTCGCAATTTTCGATCAACGAGTAGTAGGGAAGAGACCATGGTCGAGTCTTCGGCCATGAGGAGGAGACACACACGGATACTTGATCGGTGGGCGGCTCGTCAAGCCCGGGAAATGATAACCACCATTGAGAGGCAAACCCATGAGGCTGAAATCTTGGTACTGTCGAATTCGCAACCGGTTTCGACAAGGTCGCCGACGTTTCTGAGAGAGAATTCCCCTGCTCCATCAGATTCTTCTGCTGATCTTCCTAATATGCGAGCTTCTTCCCTTGTTCAAATGTGGAGGGAATTTGAGGCAGAAGCAAGATTGCCAACAAGGAATCAGTCTGGCAGTGTGAATTCTAATTCAGCAATGAGCAATATTGATACTGCTTCTGTTGAAGAACATTCTGTAGGATCAGAAGTTTGTGACTCTGTTGATGAGAGACATGAGGCTCTGGCAATTCCTGAGGACTCATTCCCATATTGGGAGTCTGATCAGACGGCTCCAAGCAATCCACTCCCATCATATGTGGGAGACAACGAGAGGGTTAGAGTGGCAGATATCATAAGAAGGTTGTATTCAGGGAATGGGAGGCAGAGTGTGATGACCTCTTGGAGCGATGAAATTGATAGGGAGCAGCCCATTGTGATTGATCAATCCCAATCAGAACAAGGGGAACAAAGAGATTTTCCATTTATTGGAAATCCTCCTCGGGTCAGGGGGCGACAAGCAATTATGGATTTGCTAATGCAAATGGAGCGTGAGAGGCAAAGGGAACTCAGCAGACTGGTAGAGCGTCGTGCAGTATCTCAATTCTCGCAGCGAGGTCGTATTCAGTCATTGCTCAGGCTCAGATTCCTACAACGCGAAGTTGCAATTCAAAATCAACGGCGTCCAGCTTCAACAGCATCAGAATTGGACGAATTACAGCAACGAACTACCATCTTTTTCCTAAGGGAGAGATTTAACCAAAGAGTCGAACGGGATGTTAGAGCAGTCCTGAGTGGGGAAGATAACTTGAGAAGATCTCATACACAGTTACCAAATAACACCTTAGATTCAGAACATTCTGGTTTGTCTGATCAGCTCATGAGTGAAGACATACATCATGAAGAGGTTGATACAAATGAGCAGGAGAACACGTCTTACGTAAACCACTCAGTGCCATCTACAAGTGGAGATCTACAAGAAGAAGCCAGACAAATTTCAGATGTTACACAGCAAGAGACAAGTTTAGTGGTTAGCAATCTCGACTGGCAAGGACATGTGGACACTGCAACAACCTCGCAAAGTTGGGAAGTGGATGTAGCAACAGAAGAACCAGACCCCGATACACCGCAGCATGTAGAATCTGTTGATGGTTGGGAAGGGGTTACAGTAACAGAAGAACCAGACCATGTTACCGGGCAGCTTGTAGGATCCAATGATGGAACCTGGCTAAGTGACGTTTCTCATCCACAGAGAGATTGGGAAAGTCACAGGCAAGCATGGTACCATGATATACTTGAGAATAATTCAGACAATGTGGAAATTCGCGAGCTTCTTGAAAGAAGAAGTGTATCAACTTCCCTTGCCAGTGGCTTCAGAGGGAGAATGGAACAATTGATCTTTTCTTACTTACAAAGACAACGGCATCAAGCAGTTGGCGAGAGTGCCGAAGAAGAAGTAGAGAACCCCATTGAGCATCAATATCACGAAGTGAGCGATGATTCTGATCAAATGGCACCTACATCATTGCAACTACCTCTACCACCTCGGTTGAGATCACGTAATCGGTATCAAAACCACGAAGTCAGTGATGAATTTGATCAAGTTGCATCTACATCATTGCAACTGCCTCCACCATCTCAATCTTACTACCAAGACAACCAGCAACGTTCTCCATTCATAAATCATTCTTCACTTGAAATGGAGCTCATATATGATTTGAGAGGACATATGGAACAGCTTCATCAAGAGATGTCCGAGCTGCGAGAATCAATAGCGAGCTGCATGGACATGCAAGTGAAGTTGCAGCACTCCATTAAGCAAGAGGTTTCAGCTGCTGTATGCCATTCTGTTCGAGGAGGGGAAGTGAAGGAGTTCTCCAGTGGGGGACCAATGAGGAAAGGCAGTTGTTGTATTTGCTACGAAATGCAAATCGACTCGCTTTTGTACAGATGTGGGCACATGTGCACCTGTTTCAAGTGTGCCCATGAGTTGCAGTGGAGTAGCGGGAGATGTCCGATATGTCGAGCTCCAATTGTGGATGTCGTGCGAACATACTCCGACTCCTAA 2532 0.4597 MASSRIEMASSPYSNVLRDHNQRVRHRDRERGSNSRAQAAFQKNLKELVRDNLHTCIVLSAPRDTDAVVDENSQHRIENRDCWTSDEERNGRNFRSTSSREETMVESSAMRRRHTRILDRWAARQAREMITTIERQTHEAEILVLSNSQPVSTRSPTFLRENSPAPSDSSADLPNMRASSLVQMWREFEAEARLPTRNQSGSVNSNSAMSNIDTASVEEHSVGSEVCDSVDERHEALAIPEDSFPYWESDQTAPSNPLPSYVGDNERVRVADIIRRLYSGNGRQSVMTSWSDEIDREQPIVIDQSQSEQGEQRDFPFIGNPPRVRGRQAIMDLLMQMERERQRELSRLVERRAVSQFSQRGRIQSLLRLRFLQREVAIQNQRRPASTASELDELQQRTTIFFLRERFNQRVERDVRAVLSGEDNLRRSHTQLPNNTLDSEHSGLSDQLMSEDIHHEEVDTNEQENTSYVNHSVPSTSGDLQEEARQISDVTQQETSLVVSNLDWQGHVDTATTSQSWEVDVATEEPDPDTPQHVESVDGWEGVTVTEEPDHVTGQLVGSNDGTWLSDVSHPQRDWESHRQAWYHDILENNSDNVEIRELLERRSVSTSLASGFRGRMEQLIFSYLQRQRHQAVGESAEEEVENPIEHQYHEVSDDSDQMAPTSLQLPLPPRLRSRNRYQNHEVSDEFDQVASTSLQLPPPSQSYYQDNQQRSPFINHSSLEMELIYDLRGHMEQLHQEMSELRESIASCMDMQVKLQHSIKQEVSAAVCHSVRGGEVKEFSSGGPMRKGSCCICYEMQIDSLLYRCGHMCTCFKCAHELQWSSGRCPICRAPIVDVVRTYSDS* 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01595 843 MobiDBLite consensus disorder prediction 457 489 - -
Eupl06g01595 843 MobiDBLite consensus disorder prediction 426 444 - -
Eupl06g01595 843 MobiDBLite consensus disorder prediction 1 37 - -
Eupl06g01595 843 ProSiteProfiles Zinc finger RING-type profile. 791 830 IPR001841 -
Eupl06g01595 843 MobiDBLite consensus disorder prediction 463 489 - -
Eupl06g01595 843 MobiDBLite consensus disorder prediction 19 34 - -
Eupl06g01595 843 PANTHER BNAC05G24000D PROTEIN 1 843 - -
Eupl06g01595 843 SUPERFAMILY RING/U-box 790 837 - -
Eupl06g01595 843 Coils Coil 732 752 - -
Eupl06g01595 843 Pfam Zinc finger, C3HC4 type (RING finger) 788 835 - -
Eupl06g01595 843 MobiDBLite consensus disorder prediction 151 174 - -
Eupl06g01595 843 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 777 841 IPR013083 -
Eupl06g01595 843 MobiDBLite consensus disorder prediction 1 18 - -
Eupl06g01595 843 MobiDBLite consensus disorder prediction 86 111 - -
Eupl06g01595 843 MobiDBLite consensus disorder prediction 651 671 - -
Eupl06g01595 843 MobiDBLite consensus disorder prediction 426 445 - -
Eupl06g01595 843 CDD mRING-HC-C3HC5_NEU1 788 840 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01595 Eupl-Chr6 31620528 31624868 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01595 791 837 C3H Transcription Factor Family AT3G06140 42.553 1.54e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01595 - - nnu:104599793 783.867