Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Eupl06g01586 | ATGGATGCTTTCGGAGGGTTTTTCGTCGACGAGAAAGCCGTTCGTGTAGAGAACATCTTCTTAGAGTTTCTCAAGAGCTTTAAGGTAAATGAGAGCTCAGGCGAACCGTTCTACGAATCAGAGATTGAAGCAATGAAATCGAAGGAATCGACAACGATGTTCATTGATTTCTCTCACGTCATGCGCTTTAACGATGTTCTTCAGAAGGCTATCTCAGAGGAGTATTTAAGATTTGAGCCGTACTTGAAGAATGCCTGCAAGAGATTTGTAATGGAGCAGAAACCAACGTTCATTGCTGACGATAACCCTAACAAAGACATAAACGTTGCCTTCTACAACATCCCCCTTTTAAAGAGATTGAGAGATTTGTCGACGGCGGAGATTGGAAAATTAGTTTCAGTGACAGGGGTTGTCACTCGAACCAGTGAGGTTCGACCAGAGCTTCTTCAAGGGACTTTCAAATGCTTGGAATGTGGAAGTGTGATAAAAGATGTTGAACAACAATTTAAATACACCGAGCCAATAATTTGTGTGAATGCAACCTGTTCGAACCGAGCAAAGTGGGTGTTGCTTCGGCAAGAGAGCAAATTTGCAGATTGGCAGAGAGTTCGCATGCAGGAGACCTCAAAAGAGATACCTGCGGGCTCCCTTCCCCGATCATTGGATGTTATCCTCCGCCATGAGATTGTCGAGCAGGCCAGGGCCGGGGACTTGGTCATTTTCACAGGTACTGTGGTTGTAATACCAGACATAATGGCATTAGCCTCCCCTGGGGAGAGAGCAGAATGCAGACGAGAAGCCACCCAGCGTCAGAATTCAACCAGTGGACATGATGGTGTTAGGGGGCTACGAGCATTGGGAGTGAGAGACCTTTCCTATCGCCTTGCGTTCATTGCCAATTCGGTGCAGGTGTCTGATGGTAGAAGGGATGGTGACGTTAGGAATAGAAAGAAGGATGCTGATGAAGGCGATAACCAGCAGTTCACGGCAGAAGAGCTGGATGAAATCCAGAGGATGAGGAACACCCCTGATTTCTTCAATAAGCTCGTCGATAGCATTGGCCCCACTGTTTTCGGTCACCAAGAAATAAAGCGAGCAATCCTGCTTATGGTGATGGGCGGTGTCCACAAGTTAACTCATGAAGGCATCAACCTGAGAGGGGACATCAATGTCTGTATTGTTGGAGATCCCAGCTGTGCAAAGTCCCAGTTCCTCAAGTATGCCACAAGCCTAGTTCCACGTTCTGTGTACACATCTGGAAAATCCTCCTCTGCTGCAGGTTTGACGGCAACTGTGGCCAAAGAACCTGAAACAGGAGAGTTTTGCATTGAGGCTGGTGCACTAATGCTTGCTGATAATGGCATATGTTGCATCGATGAATTTGATAAAATGGACATCAGAGACCAGGTTGCCATTCACGAAGCCATGGAACAGCAAACCATAAGCATCACAAAAGCAGGAATACAAGCGACATTGAATGCTCGAACTTCAATTTTAGCCGCTGCAAACCCCACAGGTGGGCGCTACGACAAGTCAAAACCACTCAAGTACAATGTGGCCCTCCCTCCTGCTATCCTTTCGAGGTTTGATCTGGTATATGTTATGATCGATGAGCCAGATGATCAAACTGATTACCATATTGCCCACCACATCGTGAGAGTTCATCAGAAGCACGAAGATGCGCTTTCTCCTGCGTTCACCACTGCAGAATTGAAGCGTTATATAGCATATGCCAAGACTCTGAAACCCAAGTTAAGCCCAGAGGCCAGGGAAATGCTTGTGGATTCCTATGTTGCTCTGCGTCGAGGTGATACAGCTCCTGGGAGTAGAGTTGCTTATCGAATGACTGTTAGGCAGCTCGAGGCATTGATCAGGCTGTCGGAAGCCATTGCTCGAAGTCATTTGGAGCTTCTGGTGCAACCACACCATGTCCGTGTGGCAGTGAGACTACTGAAAACATCAATAATCAGTGTTGAGTCAAGTGAGATTGATTTATCTGATTTTCAAGAAGACGGTGGTGTTGTTCTTGATGGTCATGATGGTGATGGCGGAAATGGAGGTTCTGATCAGGGTGATGCTCAGCCAAGTACTGGTTCGGAAGGGCTAGCTTCGGGAAATCCAGAAAGTGGAGTAGGGTCTGGGAGCCGACCAGGAAAGAAACTAGTGATAAGTGATGAATATTTTCAGAGGGTTACTCAAGCTCTTGTCATGCGCCTTCGACAGCACGAAGAAGCTGTATTGCAGGATGGGACAGGATTGGCAGGTATGAGGCAAAGGGATTTGATTCAGTGGTACGTCAGTCAGCAGAATGAAAAATCAGCATACAGTTCCCTGGAGGAGGCTGCAACAGAGGTCGATAAAATCAAAGCTATTATAGAGAGTTTGGTACGAAGGGAAGGCCATTTGATAGTTTTATACGACGGAAGAGAACCAGCAGAGGGTGAAGAGGAATTATCACCTAGAGATAGAAGAATTTTAGCTGTGGCTCCAAATTATGTTATTGATTGA | 2508 | 0.4649 | MDAFGGFFVDEKAVRVENIFLEFLKSFKVNESSGEPFYESEIEAMKSKESTTMFIDFSHVMRFNDVLQKAISEEYLRFEPYLKNACKRFVMEQKPTFIADDNPNKDINVAFYNIPLLKRLRDLSTAEIGKLVSVTGVVTRTSEVRPELLQGTFKCLECGSVIKDVEQQFKYTEPIICVNATCSNRAKWVLLRQESKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEQARAGDLVIFTGTVVVIPDIMALASPGERAECRREATQRQNSTSGHDGVRGLRALGVRDLSYRLAFIANSVQVSDGRRDGDVRNRKKDADEGDNQQFTAEELDEIQRMRNTPDFFNKLVDSIGPTVFGHQEIKRAILLMVMGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYATSLVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDEPDDQTDYHIAHHIVRVHQKHEDALSPAFTTAELKRYIAYAKTLKPKLSPEAREMLVDSYVALRRGDTAPGSRVAYRMTVRQLEALIRLSEAIARSHLELLVQPHHVRVAVRLLKTSIISVESSEIDLSDFQEDGGVVLDGHDGDGGNGGSDQGDAQPSTGSEGLASGNPESGVGSGSRPGKKLVISDEYFQRVTQALVMRLRQHEEAVLQDGTGLAGMRQRDLIQWYVSQQNEKSAYSSLEEAATEVDKIKAIIESLVRREGHLIVLYDGREPAEGEEELSPRDRRILAVAPNYVID* | 836 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Eupl06g01586 | 835 | MobiDBLite | consensus disorder prediction | 307 | 326 | - | - | |
| Eupl06g01586 | 835 | MobiDBLite | consensus disorder prediction | 674 | 718 | - | - | |
| Eupl06g01586 | 835 | FunFam | DNA helicase | 147 | 198 | - | - | |
| Eupl06g01586 | 835 | Pfam | MCM6 C-terminal winged-helix domain | 719 | 834 | IPR041024 | - | |
| Eupl06g01586 | 835 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 356 | 656 | IPR027417 | - | |
| Eupl06g01586 | 835 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 11 | 778 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Eupl06g01586 | 835 | SUPERFAMILY | Nucleic acid-binding proteins | 20 | 250 | IPR012340 | - | |
| Eupl06g01586 | 835 | CDD | MCM6 | 348 | 654 | - | - | |
| Eupl06g01586 | 835 | Gene3D | - | 120 | 248 | IPR012340 | - | |
| Eupl06g01586 | 835 | SMART | mcm | 116 | 656 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Eupl06g01586 | 835 | Pfam | MCM N-terminal domain | 19 | 113 | IPR027925 | - | |
| Eupl06g01586 | 835 | Gene3D | - | 8 | 116 | - | - | |
| Eupl06g01586 | 835 | FunFam | DNA helicase | 716 | 835 | - | - | |
| Eupl06g01586 | 835 | FunFam | DNA helicase | 8 | 116 | - | - | |
| Eupl06g01586 | 835 | Pfam | MCM OB domain | 120 | 248 | IPR033762 | - | |
| Eupl06g01586 | 835 | Pfam | MCM AAA-lid domain | 570 | 655 | IPR041562 | - | |
| Eupl06g01586 | 835 | Pfam | MCM P-loop domain | 333 | 555 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Eupl06g01586 | 835 | Gene3D | - | 717 | 835 | - | - | |
| Eupl06g01586 | 835 | ProSiteProfiles | MCM family domain profile. | 345 | 551 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Eupl06g01586 | 835 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 117 | 129 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Eupl06g01586 | 835 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 75 | 87 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Eupl06g01586 | 835 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 167 | 184 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Eupl06g01586 | 835 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 220 | 231 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Eupl06g01586 | 835 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 279 | 300 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Eupl06g01586 | 835 | Gene3D | - | 147 | 198 | - | - | |
| Eupl06g01586 | 835 | MobiDBLite | consensus disorder prediction | 689 | 711 | - | - | |
| Eupl06g01586 | 835 | Gene3D | - | 325 | 670 | IPR027417 | - | |
| Eupl06g01586 | 835 | ProSitePatterns | MCM family signature. | 454 | 462 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Eupl06g01586 | 835 | FunFam | DNA helicase | 330 | 660 | - | - | |
| Eupl06g01586 | 835 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 386 | 401 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Eupl06g01586 | 835 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 498 | 510 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Eupl06g01586 | 835 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 474 | 487 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Eupl06g01586 | 835 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 446 | 460 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Eupl06g01586 | 835 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 525 | 533 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Eupl06g01586 | 835 | Coils | Coil | 778 | 798 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Eupl06g01586 | Eupl-Chr6 | 31270283 | 31275878 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Eupl06g01586 | 1 | 835 | Core DNA Replication Machinery Family | AT5G44635 | 73.010 | 0.0 | 1305 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Eupl06g01586 | K02542 | - | nnu:104599804 | 1446.03 |