Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01578 ATGTCGACTCAAAATCGTCGTTCATCGGTTTCTTCTTCGGCGAAACGCCCTGCATCCACGGAGAATCCTGGCAAGGTTGTGACGATTCCGCCACAGCATGCGAAGAAGAGAGCGGCTCTCAGTAACTTAACCAACCACAGCAATGCAAATCGGAACCCTGTTCGGACCTCCGGAGCGCCGGGGAATCAGGCTCCATCTGCAGCTACAATTGCCAAGGCGAAGAAGGGATCTTCAACTTACAGTCGCAATACAGGCTTGCCTTGGAATTCTGTACCTGCACCCTCATCTGTGAAATCAAGTACAACAGTTTCTACTAAGGATACTTCTCTCCCAAGAAGTGATGGACCTACCAGTAGCGTTGTGTCTGTTATTGGCTCTTTCAGCATGGACGTTTCTCCCAGTCGATCAGATGGAGGTTCAGTTTCTTTGGATGAAACAATGTCGACTTGTGATTCTTTGAATAGTCCAGACATTGAATATATAGACAATGCGGATGCTTCAGCAGTTGCTTCTTTAGAAAGAAAAACAAGTAACAATCTCCACATTTCAGAGCACACAGATGCGGCAGCAGAAAATATCTGCAAGAGAGATATACTTACGAGGATGGAAACAAATGCTAAAATTGTTGATGTTGATGGAAATCACAAGGACCCACAATTGTGTGCAACAATTGCTTGTGATATTTACAAGCACTTGCGTGCATCTGAGAACAAGAGAAGGCCTTCCGCGAACTTCATGGATGGAGTTCAAAAGGACATTAATGCCAGCATGCGTGCAATACTGATTGATTGGCTTGTGGAGGTTGCTGAAGAGTACAGGCTTGTACCTGATACATTGTATTTGACTATTAATTACATCGACCGATATCTTTCTGGCAATGTGATGAACAGGCAACGTTTACAGTTGCTTGGTGTTGCCTGCATGATGATAGCTGCCAAATATGAGGAGATTTGTGCCCCACAGGTGGAAGAATTTTGCTATATAACTGATAACACATATTTCAAGGAGGAGGTCCTGCAAATGGAAGCTGCTGTTTTGAATTACTTGAAGTTTGAAATGACAGCCCCAACGGCTAAATGTTTTCTTAGGCGATTTGTTCATGCCGCCCAAGGAAGCAATGAGGTTCCATCATTGCAGCTGGAGTGTCTCGCGAACTATGTTGCGGAGCTATCACTCCTCGAGTACAGTATGCTTTGTTATTCGCCATCGTTGATTGCTGCTTCTGCAATTTTCTTGGCCAGATATATACTGCTGCCTGCAAAGAGACCTTGGAATGCTACCTTGGGTCATTACACGCTGTATAAGCCTTCTGAACTATGTGACTGCGTGAAGGTATTACATCGTCTTTTCTGCAACAGCCATAATGCAAATTTACCTGCTATCCGGGAGAAATACAGTCAGCATAAGGTAGCCAAACATCTTTCTCTCTCTGCCTCTCTTATTCTTTGGGTGGGTGTGGGTGTGTCTGTCTCTTTCTCTCTCTCTGAAACTGGTGTAATTAAATTGCTACATAAGCATCTAAACAATGACTATTTCTTTCAACAGTACAAGTTTGTAGCCAAGAAGTACTGCCCTCCTTCAATACCTCCAGAGTTTTTCAATGACCAAAGCAACTAG 1617 0.4397 MSTQNRRSSVSSSAKRPASTENPGKVVTIPPQHAKKRAALSNLTNHSNANRNPVRTSGAPGNQAPSAATIAKAKKGSSTYSRNTGLPWNSVPAPSSVKSSTTVSTKDTSLPRSDGPTSSVVSVIGSFSMDVSPSRSDGGSVSLDETMSTCDSLNSPDIEYIDNADASAVASLERKTSNNLHISEHTDAAAENICKRDILTRMETNAKIVDVDGNHKDPQLCATIACDIYKHLRASENKRRPSANFMDGVQKDINASMRAILIDWLVEVAEEYRLVPDTLYLTINYIDRYLSGNVMNRQRLQLLGVACMMIAAKYEEICAPQVEEFCYITDNTYFKEEVLQMEAAVLNYLKFEMTAPTAKCFLRRFVHAAQGSNEVPSLQLECLANYVAELSLLEYSMLCYSPSLIAASAIFLARYILLPAKRPWNATLGHYTLYKPSELCDCVKVLHRLFCNSHNANLPAIREKYSQHKVAKHLSLSASLILWVGVGVSVSFSLSETGVIKLLHKHLNNDYFFQQYKFVAKKYCPPSIPPEFFNDQSN* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01578 538 SMART cyclin_7 360 448 IPR013763 -
Eupl06g01578 538 SMART cyclin_7 263 347 IPR013763 -
Eupl06g01578 538 MobiDBLite consensus disorder prediction 1 118 - -
Eupl06g01578 538 PIRSF Cyclin_A_B_D_E 1 482 IPR046965 GO:0016538|GO:0044772
Eupl06g01578 538 Gene3D - 241 354 - -
Eupl06g01578 538 FunFam Mitotic cyclin 6 241 341 - -
Eupl06g01578 538 MobiDBLite consensus disorder prediction 38 64 - -
Eupl06g01578 538 Pfam Cyclin, C-terminal domain 356 472 IPR004367 -
Eupl06g01578 538 ProSitePatterns Cyclins signature. 258 289 IPR006671 -
Eupl06g01578 538 MobiDBLite consensus disorder prediction 1 19 - -
Eupl06g01578 538 SUPERFAMILY Cyclin-like 356 471 IPR036915 -
Eupl06g01578 538 PANTHER CYCLINS 179 467 IPR039361 -
Eupl06g01578 538 FunFam Cyclin A1 343 473 - -
Eupl06g01578 538 CDD CYCLIN_AtCycA-like_rpt2 356 469 - -
Eupl06g01578 538 Gene3D - 227 471 - -
Eupl06g01578 538 SMART Cyclin_C_2 356 476 IPR004367 -
Eupl06g01578 538 SUPERFAMILY Cyclin-like 216 353 IPR036915 -
Eupl06g01578 538 CDD CYCLIN_AtCycA_like_rpt1 217 352 - -
Eupl06g01578 538 MobiDBLite consensus disorder prediction 72 118 - -
Eupl06g01578 538 Pfam Cyclin, N-terminal domain 227 353 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01578 Eupl-Chr6 31123182 31129849 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01578 4 535 Core Cell Cycle Gene Families AT1G44110 53.050 0.0 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01578 K06627 - nnu:104599819 720.694