Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01567 ATGGCGAACCAGATCTACGGCTACAACCCTAGCTACGGAGGAACTGGTCTCGCTGGCGTCTATACTTCAAGAACCATAACAGATCCCTATTATTCTGACTCATCTTTGATCGGTTCTTCGAGATATCTCAGTTCGGATCCTCTCTCCGCTTCCGACCCTTCTAAGTATTCTGTAATTGACAGAGGATCTTCGATGTACATGAACCCGAACGATGGGTTGAGATATCCCGGCAGTGACATGGGAGGAATTGGTGGTGCTGGAGGTTACTCGGCGAGTAGGATTTCCGGCATGGGTACGGCGTCGACTCCTTTATTATCGCAGACGTCGTGGCCTGGTGTTGATGTTGGGGCTGACCAGCATATTGCCGGCATGAAGCGGCAGAGTGAAGCTCTCTACCATCAGACTGTTCTGGGAACCCATAACACTATTGGGCAAAGTGAAGCTTTGTTTTCTACAAACTCTTTAGCCAAGCGCCCTAGATTCGAAAGTGCAAGCAATCTGCCTATTTATCCACAAAGACCAGGAGAGAAGGACTGTGCCCACTATATGCTCACAAGAACCTGTAAGTTTGGAGAGAGCTGCAAGTTCGACCATCCTATTTGGGTTCCTGAGGGTGGAATCCCGGATTGGAAAGAGGTTCCGCTTGTTGCTACCGTTGAATCTCTTCCTGAAAGACCTGGAGAACCGGATTGTCCTTACTTTCTGAAGACCCAAAAATGCAAGTTTGGTTTTAGATGCAAGTTCAACCATCCAAAAGACAAAATAGACTCTTTGGTTGTTTCTGAACCTGTTGATCTTTCTGTATTACCTGAGAGGCCATCTGAGCCACCATGTTCGTTCTACATGAAGACTGGAAAATGTAAGTTTGGTGCAATCTGCAAGTTTCATCACCCTAAAGATATCCAAATACCATCAGCTGGTCAAGATAACGGTAATGGAGAACAGACTGAATCAGTCATCAAGGATGATGAAATAACAACTGGAGATGCAATGTTAGTGAAGCCGTTTGTTCCATTCACTCCAGCATTGTTACATAATTCCAAGGGATTGCCTATAAGACCGGGTGAAGTGGATTGTCCGTTCTACCTCAAGACTGGCAGTTGCAAGTATGGTGCCACTTGCCGCTATAATCATCCTGACAGACACTGTATCAATCCGCCAGTGGCTGGTGCTCTAGGCCACACAATCATTTCCTCCCCAGCTACAGCTAATCTGAACATGGGAGTCATTAATCATGCTGCCTCTATTCTTCCAACCATCGACCCCAGGCTAGCTCAGACAACGATGGGTATGGGTCCAACTATTTACCCTCAACGACCTGGTCAGATTGAATGTGATTTCTATATGAAAACTGGGGAGTGCAAGTTTGGAGAAAGATGCAAGTTCCATCACCCCATTGATCGGTCAGCACCAACACCATCAATGACAAAGCAGGCCCTTCAACAGAACGTAAAGCTCACTCTTGCTGGCCTACCTAGGAGAGAGGGTGCAATTATCTGCCCTTTTTACATGAAGACTGGCACATGCAAATACGGTGTTACGTGCAGGTTTGATCATCCACCGCCAGGGGAGGCCATAGCCATGGCATCAGTGCAAGGAACCTCTGTTACTGTTGGGGGGGAAGGGGAAGATAAAGGGGCCGAAATCATTCAGGAACAACAGTAA 1665 0.4709 MANQIYGYNPSYGGTGLAGVYTSRTITDPYYSDSSLIGSSRYLSSDPLSASDPSKYSVIDRGSSMYMNPNDGLRYPGSDMGGIGGAGGYSASRISGMGTASTPLLSQTSWPGVDVGADQHIAGMKRQSEALYHQTVLGTHNTIGQSEALFSTNSLAKRPRFESASNLPIYPQRPGEKDCAHYMLTRTCKFGESCKFDHPIWVPEGGIPDWKEVPLVATVESLPERPGEPDCPYFLKTQKCKFGFRCKFNHPKDKIDSLVVSEPVDLSVLPERPSEPPCSFYMKTGKCKFGAICKFHHPKDIQIPSAGQDNGNGEQTESVIKDDEITTGDAMLVKPFVPFTPALLHNSKGLPIRPGEVDCPFYLKTGSCKYGATCRYNHPDRHCINPPVAGALGHTIISSPATANLNMGVINHAASILPTIDPRLAQTTMGMGPTIYPQRPGQIECDFYMKTGECKFGERCKFHHPIDRSAPTPSMTKQALQQNVKLTLAGLPRREGAIICPFYMKTGTCKYGVTCRFDHPPPGEAIAMASVQGTSVTVGGEGEDKGAEIIQEQQ* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01567 554 SUPERFAMILY CCCH zinc finger 230 255 IPR036855 GO:0046872
Eupl06g01567 554 ProSiteProfiles Zinc finger C3H1-type profile. 353 381 IPR000571 GO:0046872
Eupl06g01567 554 Gene3D - 224 310 - -
Eupl06g01567 554 Gene3D - 438 535 - -
Eupl06g01567 554 SMART c3hfinal6 173 200 IPR000571 GO:0046872
Eupl06g01567 554 SMART c3hfinal6 494 521 IPR000571 GO:0046872
Eupl06g01567 554 SMART c3hfinal6 439 466 IPR000571 GO:0046872
Eupl06g01567 554 SMART c3hfinal6 225 252 IPR000571 GO:0046872
Eupl06g01567 554 SMART c3hfinal6 353 380 IPR000571 GO:0046872
Eupl06g01567 554 SMART c3hfinal6 272 299 IPR000571 GO:0046872
Eupl06g01567 554 ProSiteProfiles Zinc finger C3H1-type profile. 494 522 IPR000571 GO:0046872
Eupl06g01567 554 ProSiteProfiles Zinc finger C3H1-type profile. 173 201 IPR000571 GO:0046872
Eupl06g01567 554 ProSiteProfiles Zinc finger C3H1-type profile. 272 300 IPR000571 GO:0046872
Eupl06g01567 554 PANTHER PROTEIN PHOSPHATASE RELATED 340 387 - -
Eupl06g01567 554 FunFam zinc finger CCCH domain-containing protein 37 437 535 - -
Eupl06g01567 554 FunFam Zinc finger CCCH domain-containing protein 37 129 210 - -
Eupl06g01567 554 ProSiteProfiles Zinc finger C3H1-type profile. 439 467 IPR000571 GO:0046872
Eupl06g01567 554 Gene3D - 119 212 - -
Eupl06g01567 554 Gene3D - 345 385 - -
Eupl06g01567 554 ProSiteProfiles Zinc finger C3H1-type profile. 225 253 IPR000571 GO:0046872
Eupl06g01567 554 SUPERFAMILY CCCH zinc finger 357 380 IPR036855 GO:0046872
Eupl06g01567 554 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 442 465 IPR000571 GO:0046872
Eupl06g01567 554 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 499 521 IPR000571 GO:0046872
Eupl06g01567 554 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 299 IPR000571 GO:0046872
Eupl06g01567 554 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 175 199 IPR000571 GO:0046872
Eupl06g01567 554 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 227 252 IPR000571 GO:0046872
Eupl06g01567 554 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 355 379 IPR000571 GO:0046872
Eupl06g01567 554 SUPERFAMILY CCCH zinc finger 498 521 IPR036855 GO:0046872
Eupl06g01567 554 SUPERFAMILY CCCH zinc finger 275 300 IPR036855 GO:0046872
Eupl06g01567 554 SUPERFAMILY CCCH zinc finger 441 468 IPR036855 GO:0046872
Eupl06g01567 554 SUPERFAMILY CCCH zinc finger 174 200 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01567 Eupl-Chr6 30852084 30870387 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01567 351 536 C2H2 Transcription Factor Family AT5G16540 33.690 1.25e-26 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Eupl06g01567 zf-CCCH 2.2e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01567 - - nnu:104599826 907.131