Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01552 ATGATGCCAGGAAATGGACAGGTATCGGTTCCTCCAGGTTTCAGATTCCATCCAACAGATGAGGAGCTTCTCTATTATTATCTTAGGAAGAAGGTGGCTTATGAAGTCATAGACCTCGATGTCATCAGAGACGTCGATCTGAACAAACTCGAACCTTGGGATCTCAAAGACAAATGTAGAATTGGATCGGGCCCTCAGAACGAGTGGTATTTCTTCAGCCACAAGGACAAGAAATATCCAACTGGAACCCGAACCAACCGGGCTACAACTGCTGGCTTTTGGAAAGCCACTGGGAGGGACAAGGCCATTCACCTCAGCAATTCCAAGAGAATTGGCATGAGGAAAACCCTAGTTTTTTACATAGGACGAGCTCCTCATGGGCAAAAGACAGATTGGATCATGCATGAATATCGCCTCGACGACGAGAACACCGAGGTCCAGCAGGAAGATGGGTGGGTTGTTTGTAGGGTATTCAAGAAGAAGAACCTCCAAAGGGGTTTCCAACCGGAAATTGCTCAAGAGGAAGAACTTTTCAATCATATGAAGGCAAGTGGATTATCTGTTCCATTGCAGCCCAAACAATACTTTCAAACGCAATATGATTTCACCTTTGATAGCTCTATGCATCTCCCACAGTTGCTGAGTCCAGAGTCAGCTGCTTGTCCATCTTTCTTATCACCTATTTCGTTGAGCACCATGGACATTGAGTGCTCTCAAAACTTAATGAAATTAACATCAAGTGGTGGTGGTGGACACATTCAACATGAGAGGATTAATGGTGATTGGTCTTTCCTGGACAAACTTCTTGCCTCCCATCAAAGCTTGGATCACTTCTGCCAAAGTAAATGCAATCCTTCCTCGCAAGTTCTTGACGTGGGTCCTTCCACTCAAAAATTCCCATTTCAGTACCTTGGTTGTGAAACAGACCTTCTGAAATTTTCTAAGTAA 948 0.4441 MMPGNGQVSVPPGFRFHPTDEELLYYYLRKKVAYEVIDLDVIRDVDLNKLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHLSNSKRIGMRKTLVFYIGRAPHGQKTDWIMHEYRLDDENTEVQQEDGWVVCRVFKKKNLQRGFQPEIAQEEELFNHMKASGLSVPLQPKQYFQTQYDFTFDSSMHLPQLLSPESAACPSFLSPISLSTMDIECSQNLMKLTSSGGGGHIQHERINGDWSFLDKLLASHQSLDHFCQSKCNPSSQVLDVGPSTQKFPFQYLGCETDLLKFSK* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01552 315 FunFam NAC domain-containing protein 19 164 - -
Eupl06g01552 315 Pfam No apical meristem (NAM) protein 11 139 IPR003441 GO:0003677|GO:0006355
Eupl06g01552 315 SUPERFAMILY NAC domain 5 160 IPR036093 GO:0003677|GO:0006355
Eupl06g01552 315 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 216 - -
Eupl06g01552 315 Gene3D NAC domain 19 164 IPR036093 GO:0003677|GO:0006355
Eupl06g01552 315 ProSiteProfiles NAC domain profile. 10 160 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01552 Eupl-Chr6 30353211 30354890 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01552 2 315 NAC Transcription Factor Family AT1G79580 53.704 2.38e-120 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Eupl06g01552 NAM 2.8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01552 - - ming:122088033 541.191