Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01546 ATGGAGGAAGTGCAGCAGATATCTCCGGCCAATCCGAATCCGGCGGGGAGTCCTGGGAAGGAGCAGCAAGCGGCAGGAGTGGGCATCCTTCTCCAGATCATGATGCTCGTGCTCTCCTTCGTCCTCGGCCATGTCCTTAGGCGCCACAAATTCTACTATCTCCCCGAAGCCAGCGCTTCTCTTTTGATCGGTTTGATCGTTGGTGGGCTTGCTAACATTTCAAATACAGAAACAAGCATCAGGGCGTGGTTCAACTTCCATGAGGAATTTTTCTTCCTCTTCTTGTTACCCCCAATCATATTTCAGTCAGGTTTCAGCTTATCACCTAAACCGTTCTTTTCGAACTTTGGGGCCATTGTAACATTTGCTATTCTAGGGACATTTATTTCTTCGGTTGTTACTGGGGTTTTAGTTTACCTTGGTGGCGTGACGTTCCTCATGTATAGATTGCCATTTGTTGAATGTCTGATGTTTGGTGCTCTTATTTCTGCAACAGATCCTGTCACTGTATTATCCATATTTCAGGAACTTGGCACAGACACGAACCTTTATGCTTTGGTATTTGGCGAATCTGTTTTAAATGATGCAATGGCAATTTCCTTGTACAGGACAATGTCATTAGTAAAAAGTCATGTGTCATCCGGGCAAAACTTCTTTTTGGTCATCCTCAGGTTTCTTGAGACCTTTGTTGGCTCATTGTCATCAGGGGTTGGTGTTGGATTTACTTCTGCTTTGCTTTTTAAGTATGCAGGATTGGATATTGACAATCTTCAGAACTTGGAGTGCTGCCTGTTTGTTCTTTTTCCATATTTCTCGTACATGCTAGCAGAAGGTTTTGGCCTTTCTGGCATCGTCTCAATATTGTTCACAGGAATTGTTATGAAGCACTACTCGTTCCCAAATTTGTCAGAAAATTCTCAACGATTTGTTGCTGCCTTTTTCCATTTGATATCGTCATTGGCAGAAACATTTGTATTCATATACATGGGTTTTGATATAGCTATGGAACAGCATAGCTGGTCACATGTTGGTTTCATATTTTTCTCAATTTTGTTTATTGTAGTTGCAAGGGCGGCAAATGTTTTTTCTTGTGCATATTTGGTCAACTTGGTTCGACCAGCAAATCGACAAATACCTTTAAAACATCAGAAAGCACTTTGGTATAGCGGACTTAGAGGGGCTATGGCGTTTGCCCTTGCTCTGCAATCAGTTCATGATCTTCCAGACGGACATGGCCAGACAATATTCACTGCAACCACTGCAATAGTTGTTTTGACGGTCTTATTGATTGGAGGATCAACCGGTACTATGTTGGAAGCTCTACAAGTTGTAGGAGATGGTCATGATGGCCCCTTGGGAGAAAGCTTCGAAGGGAACACAGGTTACATTGCTCCTTCTTATGATGAGGGCGCTTCGTCAGGCACTAAGCTGAAGATGAGACTCAAAGAATTCCACAAGAGCACCGCGTCTTTCACTGCATTAGATAAGAATTACCTCACCCCATTCTTTACAACTCAAAATGGAGATGATGAAGAGCATGATGAGCCAGTGCCCAATTCTAGAAGAGGGAGCTTCCGTGGCCGTGGGTAA 1590 0.434 MEEVQQISPANPNPAGSPGKEQQAAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGGLANISNTETSIRAWFNFHEEFFFLFLLPPIIFQSGFSLSPKPFFSNFGAIVTFAILGTFISSVVTGVLVYLGGVTFLMYRLPFVECLMFGALISATDPVTVLSIFQELGTDTNLYALVFGESVLNDAMAISLYRTMSLVKSHVSSGQNFFLVILRFLETFVGSLSSGVGVGFTSALLFKYAGLDIDNLQNLECCLFVLFPYFSYMLAEGFGLSGIVSILFTGIVMKHYSFPNLSENSQRFVAAFFHLISSLAETFVFIYMGFDIAMEQHSWSHVGFIFFSILFIVVARAANVFSCAYLVNLVRPANRQIPLKHQKALWYSGLRGAMAFALALQSVHDLPDGHGQTIFTATTAIVVLTVLLIGGSTGTMLEALQVVGDGHDGPLGESFEGNTGYIAPSYDEGASSGTKLKMRLKEFHKSTASFTALDKNYLTPFFTTQNGDDEEHDEPVPNSRRGSFRGRG* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01546 529 MobiDBLite consensus disorder prediction 1 21 - -
Eupl06g01546 529 PANTHER SODIUM/HYDROGEN EXCHANGER 19 514 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Eupl06g01546 529 NCBIfam sodium/hydrogen exchanger 3 32 447 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Eupl06g01546 529 Pfam Sodium/hydrogen exchanger family 35 439 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Eupl06g01546 529 MobiDBLite consensus disorder prediction 507 521 - -
Eupl06g01546 529 MobiDBLite consensus disorder prediction 1 18 - -
Eupl06g01546 529 Gene3D - 152 204 - -
Eupl06g01546 529 MobiDBLite consensus disorder prediction 503 529 - -
Eupl06g01546 529 PRINTS Na+/H+ exchanger signature 90 101 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Eupl06g01546 529 PRINTS Na+/H+ exchanger signature 159 169 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Eupl06g01546 529 PRINTS Na+/H+ exchanger signature 104 118 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Eupl06g01546 529 PRINTS Na+/H+ exchanger signature 119 127 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01546 Eupl-Chr6 29906234 29966765 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01546 33 516 Antiporters AT5G55470 31.286 5.60e-56 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01546 K14724 - msin:131256551 883.634