Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01543 ATGAAGCAACTCATCCGACGCCTCTCTCGAGTCGCCGACTCGTCTCAGTACTGTCTCCTCCGATCCGACTCCCGGGCCTCTTCAAGAACTCGCCGATCCGGCTCCTTCCGAATCACCAAAGATCGCCGATCCAGTGGCGTTCCTGAGGGTCACCTTCCTGTCTACGTCGGTGAGGAGATGGAGAGGTTTATCGTCAGCGCTGAATTCTTGAACCATCCGATCTTTGTCCAGCTTCTCAAGAAATCGGCTCAGGAGTACGGATCGGAGGCTGGATCAGTGGACTCTGATCCCAATCCAGATCGCCGATCCATGACGGGATTGGTGCATCTCTCTCGAGACAAAGTGAGACTTCCCAGGGAAACAGTGATCTCGGCCCGAGATGATCCATTTTTAGATTGTATCGGTGGGTTCCGATCCCGATCCAGATCAGGCCGCCGAGACTTCGAACCATGGTTTCCAAGCTTGTTTCCAAGACCCCAGGCATTCGGGTACTCTACTACTGAGATCTTGAGGCACTTTGGACTACAGCCCAATCTTGGTAAAGCTCCTTCCATTCGCCCTTGTTGGTGGATCCCTCCTCCTTTGGGCGTCATCAAGCTCAATTGTAATGGAGCTTCATGCGGTAATCCAGGTCCAAGTGGGCTGGATGTCACATTTAGGGACTCTTGTGGCACATTCATAGGTGCTCTAGCAGTTGGCCTTGGGGTACTGGTATCCAATTACATTGCCGAATGCCAAGTGATCACTGATGGGGCAGACCTCGTTCTCTCAAAAGGTTGCAGTTGTATTTGGATCAAATCTGACTCTGAGGCGGCAATTAAAGCCGTCCTCAAGGATGATATTCCTCGGAAGGTTAAGGATAAATGTGACCGAATCAAATCCCGCTTCCATTGGCTTAGATTGAGCTCCACCTGGAGGGAGGTTAATTTTAGTGCTGATCTTTATGCAAACAAGGTGACCTCCATTCCAAATGGCTCGAGTACTTGGTGGGCGACGAAACCTTCCTTTCTGTTGTCGGTTGAGAACCCTTTCTTGACCTACTACAGATTTGCGTACTGA 1059 0.508 MKQLIRRLSRVADSSQYCLLRSDSRASSRTRRSGSFRITKDRRSSGVPEGHLPVYVGEEMERFIVSAEFLNHPIFVQLLKKSAQEYGSEAGSVDSDPNPDRRSMTGLVHLSRDKVRLPRETVISARDDPFLDCIGGFRSRSRSGRRDFEPWFPSLFPRPQAFGYSTTEILRHFGLQPNLGKAPSIRPCWWIPPPLGVIKLNCNGASCGNPGPSGLDVTFRDSCGTFIGALAVGLGVLVSNYIAECQVITDGADLVLSKGCSCIWIKSDSEAAIKAVLKDDIPRKVKDKCDRIKSRFHWLRLSSTWREVNFSADLYANKVTSIPNGSSTWWATKPSFLLSVENPFLTYYRFAY* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01543 352 SUPERFAMILY Ribonuclease H-like 196 313 IPR012337 -
Eupl06g01543 352 Gene3D - 197 322 IPR036397 GO:0003676
Eupl06g01543 352 Pfam Reverse transcriptase-like 201 318 IPR002156 GO:0003676|GO:0004523
Eupl06g01543 352 MobiDBLite consensus disorder prediction 30 47 - -
Eupl06g01543 352 PANTHER OS05G0353850 PROTEIN 169 335 - -
Eupl06g01543 352 MobiDBLite consensus disorder prediction 30 51 - -
Eupl06g01543 352 Pfam Auxin responsive protein 7 89 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01543 Eupl-Chr6 29741590 29746360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01543 45 87 Calmodulin-binding Proteins AT4G34750 53.488 5.65e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01543 K14488 - ming:122094158 134.806