Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01539 ATGATAGTTGACGTGGTGAAGGCATTAAACTCCATTTTACAACAATGGGACAAACCAGCCGGTGATTCGTGGAACATAAGTGGAGAACCGTGTAGCGGAGCTGCAATCAACAACTCAACAAATATCGAAAACTCGGATTTCAACCCAGGGATTAAATGCAACTGTGCGTACGATAACGGATCTACTTGCCACATAACCCATCTGAAAGTATATAATCTAGATGCAACAGGGGTAATTCCAGAGGAGCTCCAGAATTTGACTTATCTCACCTATTTTAAGGTGGATCAGAATTACTTAACAGGTCCCTTGCCTGCATTTATCGGGAATTTATCTGCGTTGGAAATCTTGTCGGTTGGTGTTAATGCATTATCTGGCCCCATCCCAGAGGAGCTTGGACAGCTTCGGAATCTACAAGAACTGGTTTTTGGCTCAAACAAGTTCAATGGATCCCTTCCTCCACAGCTTGGGAATTTAGTCAATCTGGAGAAGATTTACATGGACAGTTCTGGATTGGGTGGAGAGATTCCTTCAACGTTTGCTAACCTAGTAAACATGCAAACCTTGCGGGCATCAGATAATCCCTTCACGGGCAAGATACCTGACTTCATCGGGAATTGGACAAAACTTACCTCTTTGATATTCCAAGGTAATGCTTTTGAAGGTCCAATACCATCCAGCTTTTCTAGTTTGACTTCATTAACTGATCTGCGGATAAGTGACTTGTCTAATGTGAGTTCATCGTTGGATTTTATTAAGGACATGAAGAATTTAACCATCTTAGTTTTGAGAAATAATTTGATTTCTAGTAGTATTCCATCTGATATTGGAGAGTACCAAAATCTTCAGAGGCTGGATTTGAGCTTCAACAATTTAACGGGACAAATTCCAAGCTCTCTATTCAATTTGAGTTCTCTCTCATACTTGTTCCTTGGAAATAATAGCTTATCTGGTACCCTTCCCTCTCAAAAAAGTTTAAAACTTCTCAATGTAGATATGTCATACAATGAACTATCAGGAAGTTTTCCTTCTTGGGTGGCCCAACAAAATTTAACATTGTATGTGAAGAAGCAGAAAATTTGTTTCTCGAACCTTCATTTTTCTACTTCTCACAATGCATTTGTTTTGGATTCAGGATTGAATTGTCTTCAACGAAATTTTCCTTGCAATAGGGATTCTCCACGTTATTCCTCCTTTGCAATAAAGTGTGGTGGCCTAGAGAAGACATCTTCTAGTGGAATACTTTTTGAGAGTGAAAATTCACCTCTAGGCCCAGCATCATATTATGTATCTGATACAAGAAGATGGGCAGTTAGCAACGTCGGATTGTTTGGTGATAATCTTGCAGCTACCTACATCGAAAACACTTTATCGCCAATTACAGGTACTTTAGACTCAGAGTTGTTCCAGACAGCAAGGCTATCTCCAGGATCACTAAGATATTACGGCTTAGGTCTTGAGAATGGAATCTACAATGTAAGTTTGCAATTCGCAGAGATACGTCATGCTGACGAAAGCTCACGCACTTGGGTTAGTCTTGGAAGGCGTGTTTTTGATATTTATCTACAGGGGAATCTACAGTTAAAAGACTTCGATATAAGAAAGGAGGCAGGTGGTGTATCTTATAAAGCTGTTACAAGGGCTTTCAAGGCTCAAGTATCTGAGAACTTCCTCGAAATTCATCTATTTTGGGCCGGAAAGGGGACATGTTGCATACCTGTACAAGGTTATTATGGACCATCCATTTCAGCCATCAGTGTTACTCCAGATTTCATCTCAACTGTTAGTAACCTTCCCCCAACTACATCAACAAAGAAAAAGATTGGCTTGATTGTTGGTATTGGAGTTGCTCTTGGGGTTGTTAGCTTTGTATCTATTTTCGTATTTTATTATTTGAGAAAAAAGAAAAGGGAAGGCAGAAATGAGGATGAAGAGCTTCTAGGAATAGGCACCATGCCAAACACTTTAAGTTATGCAGAATTGAAAACTGCTACTGGAGACTTCAATCCTACAAATAAGCTAGGAGAGGGGGGATTTGGACCTGTTTACAAGGGCATGCTTCTTGATGGAAGAGCAGTGGGTGTAAAGAAACTCTCAGTAGCATCTAACCATGGAAAGCGTCAATTTATAACAGAGATTGCCACCATTTCTACAGTGCAACATCGGAACCTTGTGCAATTGTATGGATGCTGCATTGAGGGAGATAATCGACTCTTAGTTTACGAGTATCTTGAAAACAAGAGCCTTGATCAGGCACTTTTTGGAAACAGTGATTTACATCTTGATTGGCCAACCCGTTATGAAATATGCTTGGGGACAGCAAGAGGTCTAGCTTATCTTCATGAGCAGTCGATTCCTAGGATCATACACAGAGACGTCAAGGCTAGTAATATTCTACTTGATACTAATATGAACCCCAAAATTTCAGATTTTGGTTTGGCAAAGCTGTATGATGATAAGCATACTCACGTCAGCACCCGTGTTGCAGGGACAATTGGCTATCTTGCCCCAGAGTATGCTATGCGTGGGCATCTGACAGAAAAGGCTGATGTGTTTGGTTTTGGGGTCGTCGCTTTGGAGATTGTGAGTGGGCGACCAAATTCTGACTCAAGCTTAGATCAAGAAAAGAAATATCTTCTTGAATGGGCTTGGAATCTACATGAAAATAATCGTGCATTGGAACTGGTCGATCCAACATTAACCAATTTTGACGAAGGAGAAGCTATTCGAATGATAAGATTGGGTCTTTTGTGCACTCAGGCATCACCAATGATGCGTCCACCCATGTCGCGAGTTGTGGCCATACTGACAGGAGACATGGAAGTGAGCACTATTACATCAAGGCCTAGTTACTTAACAGATTGGCAGTACAATGATACAAGCACCATTGTGGGTCATGAAAATTCAGGATCCTTCCTGTCAAAAGCTACAACTAGCCAACTTGACCCAGCAAACCACTCGCCAATAGCTGTCACTCAACCGATGCTCCATGAGATTATTGGTAAAGGACGGTGA 3012 0.41 MIVDVVKALNSILQQWDKPAGDSWNISGEPCSGAAINNSTNIENSDFNPGIKCNCAYDNGSTCHITHLKVYNLDATGVIPEELQNLTYLTYFKVDQNYLTGPLPAFIGNLSALEILSVGVNALSGPIPEELGQLRNLQELVFGSNKFNGSLPPQLGNLVNLEKIYMDSSGLGGEIPSTFANLVNMQTLRASDNPFTGKIPDFIGNWTKLTSLIFQGNAFEGPIPSSFSSLTSLTDLRISDLSNVSSSLDFIKDMKNLTILVLRNNLISSSIPSDIGEYQNLQRLDLSFNNLTGQIPSSLFNLSSLSYLFLGNNSLSGTLPSQKSLKLLNVDMSYNELSGSFPSWVAQQNLTLYVKKQKICFSNLHFSTSHNAFVLDSGLNCLQRNFPCNRDSPRYSSFAIKCGGLEKTSSSGILFESENSPLGPASYYVSDTRRWAVSNVGLFGDNLAATYIENTLSPITGTLDSELFQTARLSPGSLRYYGLGLENGIYNVSLQFAEIRHADESSRTWVSLGRRVFDIYLQGNLQLKDFDIRKEAGGVSYKAVTRAFKAQVSENFLEIHLFWAGKGTCCIPVQGYYGPSISAISVTPDFISTVSNLPPTTSTKKKIGLIVGIGVALGVVSFVSIFVFYYLRKKKREGRNEDEELLGIGTMPNTLSYAELKTATGDFNPTNKLGEGGFGPVYKGMLLDGRAVGVKKLSVASNHGKRQFITEIATISTVQHRNLVQLYGCCIEGDNRLLVYEYLENKSLDQALFGNSDLHLDWPTRYEICLGTARGLAYLHEQSIPRIIHRDVKASNILLDTNMNPKISDFGLAKLYDDKHTHVSTRVAGTIGYLAPEYAMRGHLTEKADVFGFGVVALEIVSGRPNSDSSLDQEKKYLLEWAWNLHENNRALELVDPTLTNFDEGEAIRMIRLGLLCTQASPMMRPPMSRVVAILTGDMEVSTITSRPSYLTDWQYNDTSTIVGHENSGSFLSKATTSQLDPANHSPIAVTQPMLHEIIGKGR* 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01539 1003 Pfam Malectin domain 397 584 IPR021720 -
Eupl06g01539 1003 Gene3D - 396 589 - -
Eupl06g01539 1003 FunFam Os05g0263100 protein 6 243 - -
Eupl06g01539 1003 SMART serkin_6 667 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl06g01539 1003 CDD STKc_IRAK 673 937 - -
Eupl06g01539 1003 FunFam Putative LRR receptor-like serine/threonine-protein kinase 244 369 - -
Eupl06g01539 1003 SUPERFAMILY Protein kinase-like (PK-like) 652 954 IPR011009 -
Eupl06g01539 1003 FunFam Putative LRR receptor-like serine/threonine-protein kinase 743 947 - -
Eupl06g01539 1003 SUPERFAMILY L domain-like 59 350 - -
Eupl06g01539 1003 ProSiteProfiles Leucine-rich repeat profile. 280 302 IPR001611 GO:0005515
Eupl06g01539 1003 Gene3D Ribonuclease Inhibitor 243 367 IPR032675 -
Eupl06g01539 1003 ProSiteProfiles Protein kinase domain profile. 667 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl06g01539 1003 FunFam Leucine-rich repeat receptor-like protein kinase 395 588 - -
Eupl06g01539 1003 Gene3D Phosphorylase Kinase; domain 1 630 742 - -
Eupl06g01539 1003 SMART LRR_typ_2 279 302 IPR003591 -
Eupl06g01539 1003 SMART LRR_typ_2 254 278 IPR003591 -
Eupl06g01539 1003 SMART LRR_typ_2 134 158 IPR003591 -
Eupl06g01539 1003 Gene3D Ribonuclease Inhibitor 6 242 IPR032675 -
Eupl06g01539 1003 FunFam Leucine-rich repeat receptor-like protein kinase 636 742 - -
Eupl06g01539 1003 Pfam Protein kinase domain 670 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl06g01539 1003 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 8 963 - -
Eupl06g01539 1003 Gene3D Transferase(Phosphotransferase) domain 1 743 947 - -
Eupl06g01539 1003 ProSitePatterns Serine/Threonine protein kinases active-site signature. 787 799 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01539 Eupl-Chr6 29495637 29510286 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01539 113 1003 Receptor kinase-like Gene Family AT1G56120 58.036 0.0 1028
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Eupl06g01539 Pkinase 2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01539 - - psom:113280871 1365.13