Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g01524 ATGGAGTTGGAGGTGAGGGTCGTGGGAGGGATAGAGAGCTGCTTCATCTCTCTCCCTGTATCTTTCATCCAAACCCTTCAATCGACTCGTTCGGGATTTCTTCCTCCAGTTCTTGCTCTCGAGCTTCGATCCCGCAACCACGATGTCTGGCACGTAGCCTGGTCTGGCTCTGCTTCAATGTCTTCGGCAATCGAGGTTGCTCAACAACTGGCAGAATGCATTTCTCTATCAGATCATACGACAGTTCAAGTGAGAGCTGTTTCTAATTTGCCAAAAGCTACCCTAGTTACAATAGAACCCAATAGTGAGGATGATTGGGAAGTTTTGGAGCTTAATGCTGAACATGCTGAGGCTGCTATTTTGAAACAGGTTGGTATTGTCCATGAAGGGATGAGGTTCCCTTTGTGGTTGCATGGCCACACTGTTGTTGTGTTTCTCGTGGTTTCAACTTTTCCTAAGAAATCGGTAGTGCAACTTGTGCCAGGAACTGAAGTTGCCGTCGCACCGAAGAGACGCAAGGCAAATGTGGATTCATGTCAAGATTCCCACATACAAGCTTTAGACAAAGATCAATCTATGACAAAGGCACTACTACGCGTTCAAGATCCAGACAGGAGATTGGTTCACAGATGTGAGGTCAATGGTGTTGACCTGGGGGTAGTGCTCACTTCTGTTGTTTTTATTCATCCAGAAACAGCTAAAAACTCATCATTTAACACTCTTCAGTTAGTTATTATATCGCCTAGATTACAACCGAAGGAGAACATGAAGAATCATAAAAACAATATTTTGAGAAAAAGCAGTTCAACTGCAAAGGAAGGAAATCTTGGGGCTCTGTCTGACAAGGAGGGTTTTAGACACACAATTGTTCATCTTTTACTTTCAGAATCAGTAGCTAAAGGACATGTGATGCTTCCGCAATCGCTTCGTCTTTATCTAAGAGCAGGTCTACATTCATGGGTTTATGTTAAGGGATGCAACATTACTCCAGAGAAGGATATTCCTTTGTTGACACTTTCTCCTTGCCGATTTAAGCTGTTTGGAAAAGACAAGACCCTTAAGGACAATGGTTCAAGTTTGCTCGAGAGCCGCAGAAAACTTAAGACCAAAGAGATGTCTTTTGGGACTACTTTAGTTGCTGATGTGGGAATGGTAGATTGGTCAATTCATGAAGAGATTGTTGCTGCTCTTTCATGTCAGTCTCCTGAATATGAAGTTGAAGAAGCTACATCTCAGTCCCGTACTACAAAGGGACAGCAAAGTCTTCTACATGCATGGTTTATTGGACAACTTGAGGCAATTGCCTCAAATACAGGAGTTAATGTGAGTTCATTGGTTTTGGGAAATGAAACCTTGCTTCATTTTGAAGTGATTGGCCATAAGTTTGGGAATCATGGAAAGGAACAGGCATCATCCGGTGGTTCTTCAGATAGTAGAAATATGAGTGGAGAACCTCAAGTTGAACTCTTGTACCTATTGACTACTTCTGTGGAATCTTCTCATAGTTGGCAACATAGTACATACAAGCTTGCCCTCAAGGATGAAAACAAGAGCATTGATAATCTCAGAGGCTTAGAATTGTCATTTGGAAAGTTGGATTTGGGTGACCCTGTATCTTTCGATTCTGTCAAAGAGAAAACCTTGGGAAAAAGCTTCAGTTCAACCATTTCTTCCTTGAATTGGATGGGGACAGCAACTTCTGATGTTATTAACCGTTTGACAGTGCTGTTATCTCTTACTTCTGGGAAGTTTCTTAGTGCTTACAATCTTCCACTCCCTGGGCATGTTCTTGTTTATGGACCTCCGGGTTCTGGAAAAACTCTATTAGCGACTGCTGTTGCAAAATCCTTTGAAGAGCATGGGGAGATCTTAGCACACATAGTTTTTGTAAGTTGTTCTAAACTTGCTTTAGAGAAGGCTCTGGCGATTCGGCAAACACTTTCTGGCTACATATCTGAAGCTCTTGATCATTCACCCTCCCTTGTCATCTTTGATGATCTTGATAGTATTGTTTCAACTTCCTCCAACTCCGAGGGATCTCAACCTTCGGCTTCTGTTGTTGCACTTGTGGAATTTCTCACAGATATTATGGATGAATATGGGGAAAAGAGGCAAAACTCTTGCGGAATTGGCCCTGTTGCATTTATGGCTTCTGCGCAGTCTCTTGAAAATCTGCCACAGTCCTTGAGCTCTTCAGGAAGGTTTGATTTCCACGTGCAACTGCCTGCTCCTGCTGTCTCGGAACGTGGTGCTATATTGAAGCATGAAATCCATAAGCGTTCCTTACAATGTTCTGACAACATCCTGTCAGACATTGCTTCCAAATGTGATGGATATGATGCGTATGATCTGGAAATATTGGTTGATAGGGCTGTTCATGCTGCCGTTGGCCGCTTTTTGTCTTCTGATTCTGCTTTTGAGGAACATGAAAAGCCTGTTTTAGTAATGGAAGATTTTTCACGAGCAATGCATGATTTCCTTCCAGTTGCTATGCGTGGTGTTACTAAATCTGCTTCCGAAGGTGGTCGTACTGGATGGGAGGATGTTGGTGGGCTTATCGACATCCGGAATGCTATTCAGGAGATGGTTGAATTGCCTTCAAAGTTTCCAAACATCTTTGCACAAGCTCCTTTAAGGTTGAGGTCAAATGTTCTCTTATATGGCCCTCCCGGTTGTGGCAAGACACACATTGTTGGTGCTGCTGCCGCTGCTTGTTCTTTACGGTTTATATCAGTAAAAGGGCCAGAGCTGCTGAACAAATACATTGGTGCTTCTGAGCAAGCTGTTCGGGATATATTCTCAAAAGCAGCTGCTGCGGCACCTTGCCTTCTATTTTTTGATGAGTTTGACTCTATTGCACCAAAGAGAGGACATGATAATACTGGAGTTACCGATCGCGTTGTTAATCAACTGCTGACTGAATTGGATGGTGTGGAAGTCCTGACCGGGGTTTTTGTGTTTGCTGCCACTAGTCGACCAGATTTACTTGATCCTGCACTTCTGCGACCCGGAAGGCTTGATCGCCTTCTTTTCTGTGATTTCCCATCGTGGCATGAGAGGCTGGATATTCTAACAGTTCTTTCTAGAAAGCTTCCATTGGCCTGTGACATTGATTTAAATGTCATAGCTTCTGTAACTGAAGGTTTCAGTGGTGCCGACCTCCAAGCTCTTCTGTCAGATGCACAGCTTGCATCCGTTCATGAGCTTCTGGAAAGTGGTGATAGTGATAAAGCTGGGAAAATGCCAGTAATTAGCGTTGCTCTTTTGATGTCTGTTGCTTCAAGAGCAAGGCCATCGATCTCAGAAGCTGAGAAGAAGAGACTATATGGCATTTACAGTCAGTTCTTGGATTCAAAGAAATCTGTTGCTGCACAGTCAAGGGATGCAAAGGGCAAAAGGGCAACCCTAGCATAA 3414 0.4344 MELEVRVVGGIESCFISLPVSFIQTLQSTRSGFLPPVLALELRSRNHDVWHVAWSGSASMSSAIEVAQQLAECISLSDHTTVQVRAVSNLPKATLVTIEPNSEDDWEVLELNAEHAEAAILKQVGIVHEGMRFPLWLHGHTVVVFLVVSTFPKKSVVQLVPGTEVAVAPKRRKANVDSCQDSHIQALDKDQSMTKALLRVQDPDRRLVHRCEVNGVDLGVVLTSVVFIHPETAKNSSFNTLQLVIISPRLQPKENMKNHKNNILRKSSSTAKEGNLGALSDKEGFRHTIVHLLLSESVAKGHVMLPQSLRLYLRAGLHSWVYVKGCNITPEKDIPLLTLSPCRFKLFGKDKTLKDNGSSLLESRRKLKTKEMSFGTTLVADVGMVDWSIHEEIVAALSCQSPEYEVEEATSQSRTTKGQQSLLHAWFIGQLEAIASNTGVNVSSLVLGNETLLHFEVIGHKFGNHGKEQASSGGSSDSRNMSGEPQVELLYLLTTSVESSHSWQHSTYKLALKDENKSIDNLRGLELSFGKLDLGDPVSFDSVKEKTLGKSFSSTISSLNWMGTATSDVINRLTVLLSLTSGKFLSAYNLPLPGHVLVYGPPGSGKTLLATAVAKSFEEHGEILAHIVFVSCSKLALEKALAIRQTLSGYISEALDHSPSLVIFDDLDSIVSTSSNSEGSQPSASVVALVEFLTDIMDEYGEKRQNSCGIGPVAFMASAQSLENLPQSLSSSGRFDFHVQLPAPAVSERGAILKHEIHKRSLQCSDNILSDIASKCDGYDAYDLEILVDRAVHAAVGRFLSSDSAFEEHEKPVLVMEDFSRAMHDFLPVAMRGVTKSASEGGRTGWEDVGGLIDIRNAIQEMVELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQLLTELDGVEVLTGVFVFAATSRPDLLDPALLRPGRLDRLLFCDFPSWHERLDILTVLSRKLPLACDIDLNVIASVTEGFSGADLQALLSDAQLASVHELLESGDSDKAGKMPVISVALLMSVASRARPSISEAEKKRLYGIYSQFLDSKKSVAAQSRDAKGKRATLA* 1138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g01524 1137 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 580 828 IPR027417 -
Eupl06g01524 1137 Pfam Peroxisome biogenesis factor 1, N-terminal 96 169 IPR015342 GO:0005524|GO:0005777|GO:0007031
Eupl06g01524 1137 FunFam Peroxisome biogenesis protein 1 549 744 - -
Eupl06g01524 1137 Gene3D - 745 825 - -
Eupl06g01524 1137 SMART AAA_5 880 1016 IPR003593 GO:0016887
Eupl06g01524 1137 SMART AAA_5 592 745 IPR003593 GO:0016887
Eupl06g01524 1137 Gene3D - 553 744 IPR027417 -
Eupl06g01524 1137 SUPERFAMILY ADC-like 10 88 IPR009010 -
Eupl06g01524 1137 CDD RecA-like_PEX1_r2 855 1012 - -
Eupl06g01524 1137 FunFam Peroxisome biogenesis factor 1 91 170 - -
Eupl06g01524 1137 FunFam Nuclear valosin-containing protein-like 842 1020 - -
Eupl06g01524 1137 Gene3D - 90 170 - -
Eupl06g01524 1137 ProSitePatterns AAA-protein family signature. 984 1002 IPR003960 GO:0005524|GO:0016887
Eupl06g01524 1137 Pfam ATPase family associated with various cellular activities (AAA) 596 742 IPR003959 GO:0005524|GO:0016887
Eupl06g01524 1137 Pfam ATPase family associated with various cellular activities (AAA) 884 1011 IPR003959 GO:0005524|GO:0016887
Eupl06g01524 1137 FunFam Peroxisome biogenesis protein 1 745 825 - -
Eupl06g01524 1137 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 846 1106 IPR027417 -
Eupl06g01524 1137 SUPERFAMILY Cdc48 domain 2-like 91 169 IPR029067 -
Eupl06g01524 1137 Gene3D - 844 1106 IPR027417 -
Eupl06g01524 1137 FunFam PeRoXisome assembly factor 1015 1093 - -
Eupl06g01524 1137 Pfam AAA+ lid domain 1036 1072 IPR041569 -
Eupl06g01524 1137 Gene3D - 1015 1094 - -
Eupl06g01524 1137 PANTHER AAA-FAMILY ATPASE 229 1116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g01524 Eupl-Chr6 28875663 28973885 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g01524 596 813 Calmodulin-binding Proteins AT3G56690 26.126 2.34e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g01524 K13338 - ming:122078432 1669.83